HsaINT0059150 @ hg38
Intron Retention
Gene
ENSG00000143278 | F13B
Description
coagulation factor XIII B chain [Source:HGNC Symbol;Acc:HGNC:3534]
Coordinates
chr1:197061784-197063057:-
Coord C1 exon
chr1:197062857-197063057
Coord A exon
chr1:197061970-197062856
Coord C2 exon
chr1:197061784-197061969
Length
887 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
AATAATTTTTTTTCCCATAGAAA
3' ss Score
9.24
Exon sequences
Seq C1 exon
AGAAACCCTGTGGTTTTCCTCATGTGGAAAATGGAAGAATTGCCCAATATTACTATACTTTTAAAAGCTTTTACTTTCCAATGAGCATAGACAAAAAATTGTCATTTTTCTGCTTGGCTGGTTATACCACTGAAAGTGGAAGACAAGAAGAGCAAACCACGTGTACAACAGAAGGCTGGTCTCCAGAGCCAAGGTGCTTCA
Seq A exon
GTAAGTCAGCTGGATATGTCACTCAATGTTTCAATACTCAAAGAAATTTGTATATAAAAATAGGGGTCCAATAAAAATGGAAAGCGGTTAAACCTTTTAGTAGATAAGAACAAAATCACTAGCAATCTGTCTTTCTACAAAATGAAGGCATAATTTGAAATCCAGTAAATAATGCTTTTACATTAAAATGTTATTTTCTGTATCTGTTTTTAATAATACTCTGTTGAAGGGAATAGGGTAATAACTGAAATTATCATATTGCAAGGCAAAGAGAGGTAATTTACTTTAAGTAACAAGAAACTTATTTTGATAATTAAGCATAAGATGCCAGAAAAATGCTTGAAACTCTGGCCTCTGGAAGGGCAAGATTGCTACTCTAATGCTTTATCATTTGTAAGACTCATCTCTCTTCATGTGCCAACTTCTCTCATGATACCCATTGAAAAATGTGTTTTTCAATTTTGAATTGAAAGTTTGAGTTCAAAGTTGTGAGAAGGTAATCTAATTGACTCATTTCATTATTTTATATCAGGCTACACTATCATCAAACTATCAATGATCTTCCACTAGGGCAGGTGACCCAGAGTAAGGGGCTTTGGTTGAGCCAGTTTCGTTTAAAAGAGGATGTTGAATATGGCTATTGTGGTTGATATATCTAGTAAACCTATCTAGAAGTAGATGTGGTAGGGGTAGAAATTACTATAAGAACTAAAATTAGTAAATACAAAGAGAGTCAGTGTTAAATTGAATCCATTTTCAAAAAAATTATGCAGATATTTCCAAAATGAAATCGCCAATAATAACATTATACTTTTGGCTTAATTTTACAATTTAGTAAAAGACAAGCTTAGTTTCATCATTAAGTTAAATAATTTTTTTTCCCATAG
Seq C2 exon
AAAAATGCACTAAGCCTGACCTGAGTAATGGTTACATCTCTGATGTAAAGTTATTGTATAAAATTCAAGAGAACATGCGTTATGGTTGCGCTTCAGGGTACAAAACCACTGGAGGGAAGGATGAAGAAGTGGTTCAATGTCTCTCTGATGGATGGTCTTCTCAACCAACCTGTAGGAAAGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143278:ENST00000367412:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.6)
A:
NA
C2:
PF0008415=Sushi=WD(100=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGTGGTTTTCCTCATGTG
R:
AGACCATCCATCAGAGAGACA
Band lengths:
355-1242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development