HsaINT0059161 @ hg19
Intron Retention
Gene
ENSG00000180210 | F2
Description
coagulation factor II (thrombin) [Source:HGNC Symbol;Acc:3535]
Coordinates
chr11:46750930-46760668:+
Coord C1 exon
chr11:46750930-46751111
Coord A exon
chr11:46751112-46760597
Coord C2 exon
chr11:46760598-46760668
Length
9486 bp
Sequences
Splice sites
5' ss Seq
CTGGCAAGT
5' ss Score
2.89
3' ss Seq
GACGGCTGTTCTCTTTCAAGGTT
3' ss Score
9.68
Exon sequences
Seq C1 exon
CTTGCTCCAGGCTGGATACAAGGGGCGGGTGACAGGCTGGGGCAACCTGAAGGAGACGTGGACAGCCAACGTTGGTAAGGGGCAGCCCAGTGTCCTGCAGGTGGTGAACCTGCCCATTGTGGAGCGGCCGGTCTGCAAGGACTCCACCCGGATCCGCATCACTGACAACATGTTCTGTGCTG
Seq A exon
GCAAGTCTGTGCAGGGCGGGCTGAGGGAACAGTGGGGCCCAAGCTGGGAGAACTGAGTTGTGCCTGGGTTCAAGCCATGTGACTTTGAGCAAGTTGCCTAACCTCTTGGTGGCTCAGTTTCTTCCTCTGTAAAATGGAGGTAAAAGTCTCTATCCCATAAGGTTATGGGAGGGTTAAATGAAGTAGTATATATTAATGTACTTGGCATAGTATCAGTCACCAGTGAGCTCAGATAGCAGCAAGAGGCTGCGGGTAGGGAAATGCCATTCATTCAGTCACTCAGCAAATATTTATTGAGCGCCTATCACGTTCCAGGCAGCGTTCTAGGGTATACAGCAGGGACCCAGACGGACAATGTCTGTGCCCTCAGAGAGCTTCCTTCCTAGGAGGGCACATCCATAAACAGATCTAAAACAGCAATCCCTGACCAGTGCTGTGAAGAAAAATGAAGCACAGGGAGAGAGAACGGCTGATGAAGTGGGCTTCTAAATAGGGTGGCCAGACAAGGTGGGCAGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGTCATGGTGACGCATGCCTGTAGTCGCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAGCCAGGGAGGCGGAGGTTGCAGTGAGCTGAGATCGGGCATCATTGCACTCCAGCTGGGCAACACAGCAAGACTCCATTGATCGATCGATCAATCAATCAATCAGGTGGCCAGAGAAGGTTGGAGAAGGCCTCCCTGAGAAGGTGATGTCTGGGCAGGGACTGGAAGAGGGGAAGGAAGGAGTGAGCAGGCATATCTAGGGGAGGAGCACCGCAGGCTGGGGGCATGGCAGGCACTAAGGCCCTGAGGTGGGAGCACTCTTGGCTTGTCTGGGGAGCAGTAGGGAGGCCTGGGGGGCTGAGGAGGGGCAGCAGTGGGTGAGGGGAGAGAGGGGGGCAGGCAGAGGACAGCCACTTCCTTTAGGGCCTGGAAGGACTTTATTGAGTGAGATGGGAAGTTATTGAGGGGCTTGAGGCAGGTTAAGAAATGATGTGACTGACTTTAAAAGTAAAAAATAAAAAAATTTAGTGTAATTTCAGACTCACAGAAAAGTTGTAAAAATAATACAAAGATTTCCTGTATACTGTCATCCAGATTGTCCTCCATTCTGTGGATGTGTGGGAATTTTTATATATATATATGCATAGTTTGAGAGCAAATCATGAATATGGTTTCTTTTTACCCATAAATACTTGAGTATTTCCAAAAAAAAAAAAAATACCCAAGGATGTTCTCTTATGCAACCACAATACAAATATTAAAACCCGGAAATTTTTTTTTGACATAGCTTCGCTGTCACCCAGGCTTGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCCTGCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGAATCACAGGCATGTACTACCATGCCTAGCTAATTTTTGTATTTGTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAACCACTGTACTCGGCCAAAACCAGGAAATTTTTTTTTTTTTTTGAGATGGAATCTTGCTCTGTTGCCCAGGCTAGAGTGCAGTGGCATGGTCTCGGCTTACTTGGAATTACAGGTGCCTGCCACCACGCCCGGCTAACTTTTTGTATTTTTAGTATTTTTAGTAGTGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCGGGTAATCCACCCACCTCGGCTTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACAGCACCTGGCCCAAAACCAGGAAATTAATGATGATACAATATTATTGTCTAATCTATAGACCTTATTCAAATTTTTGTTAGTCTTGCTAATGTCTTTTATAGGGAAAAAAAAAAAAAAAAGCGTGTTTCTCACCCAGGATTCAATGAAGGATCTTTCTTTGTCTTCTATGACCTTGACATGTCTGATGAGTGCAGTCTGGTTATTTTGTACACTGGCCCTGAATCCGGGTTTGTCTAAGGTTTCCTCACGGTCAGGTTCGGGCTCAGTGGTGCCATGTCCTTCTTGGTGCATCCTGTTAACTGGCACATGAGAACAATTTGTCTCATATGTGGTGAGTCTAACTCTGACCTCTTGAGGAAGGCAATGTCTGCCAAGTTTCTTGCTGTAACTTCTGTTTTTCCCTTTGTAATTAATAAGAATCTGGTAAAGAGACACTTTGATGTTTTTTTTTTTTTTTTTTTTTTGTGATGGAGTCTCCCTCTATCACCCGGGCTGGAGTGTGTGGTGCGATCTCGGCTCACTGCAACCTCCATCCCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCAGGGATTACAGGCATGTGCCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGATGGTCTCGAACTCCTGACCTTGTGATCCGTCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCAATACGCCTGGCCTACTTTGATATTTTGTATTCTGTTTGCATCAAAACCTTCTCCCAACTAGGGTGACTACCAAATGGCACTTATCTAATTCTGTCATTCCTTCTACATTTGTTAGTTACTTTATTGCTTTCCTTCCTTTCATTCTATCAGTGTGGACTTAAGGATCCTTACTTTATTCTAAGGGTTCACCTTTTTTTTTCTTTTTTTTTGAGATGGAGTTTCGCCCATGTTGCCCAGGCTGGATGGAGTGCAATGGCGTGATCTCGGCTCACTGCAACGTCCTCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCAGCCTTCCAAGGTTCTGGGATTATAGGCGTGAGCTCTACCGTGCCAGGCCATACTTTGTTACTACTGTTATTTTTTCTGATGCTCAGATGATCCCAAGTTTGGCCTGTGGAAGTCCCTTCAAGCTGGCTTCTGTGACTTGGGGAGATGTTCTGTCATTCTTTGAGTACTTTCTTTCTTTCTGGCACAGCAAAATGATTCAGGTTAATCCTACTTTCCTTACTGTAGTGTTGGAACCAGCCATTTCTCCAGGGAACCCTTGTAGTCAAGAGTGGAATTTAGAACTGAGATCTGGGTGCTGGCGTGTGCACATTGCTAGTGGGATGTCATTACTTCTAGGCTCTCTTAGTGGACAGAACCAGAAAAAAATTATATGATGCATATACCAATATCTCTATCATCTATATAAAAAACCATGAGTTCCTACTGAAACCTCCAATTCCATTCTAACACCACAGGATTAATTTTAGCTTTTCCTTTTCCATATTTGTAACTCTCTCTGTTGACAGTGAGAAACCTGACCCTCATTATCTGTAATGCATTTGCCTATTTGAACAATACTAGAATATAGTTTCAAAATCCTCCATCCATAACACTATTAAAACCAATCCTATGGCTGGGCTCAGCCCACTGCAACCTCTGCCTCCTGGACTCAAGCCAGCCTCCCACTTTAGCCTCCCGAGTAGCCAGGGCTACAGGCACACACCACCATGCCCAGCTAATTTTTGTATTTTTTGTAGAGACTGGGTCTCACTGTGTTGCCCAGACAGGTCTTGAACTCTGAGCTCAAGTGATCCATCCAACTCAGCCTCCCAAAGTGCTAGGATTACAGGTGTGAGCCACCATGCCTGGCCTCTCCTAGTAAATTTTTAGAAGTGGTGTTGTTAGGTCAAAAGGCAAACATGTATGTCATTTTTTAGAGATTTTTAAATTTCTTTCCATAAGGGTTGTACCAGTTTGCATTTCCATCACAGTGTATGAGAATGCCTGTTTCCCCACAACCTTGCCAAAAGAATGTCACAGTTTTAAATTTTTACCAATCTGAGAGGTGAGAAATAGTATCTTGAAATTGTTTTAACGGACATCTTTCAAATTGAAAATGAGGTTGAACATCGTATCATATGATTAAGGACCTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCCCTCTGTCACCTAGGCTGGAGTGCAATGGCACGATTTTGGCTCACTGCAACTTCCGCCTTCTGGGTTCAAGCGATTCTCCTGCTTCAGCCTCCCAAGCAGCTGGGACTCCAGGCGCGAGTCACCATGCCCGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTTACCAGATTGGCCAGGCTGGTCTCGAACTCCTTACCTTGTGATCCTCCCGCCTCGGCCTCCCAAAGTGCTGAGATTACAGGCATGAGCCACCACGCCTGGCCTAAGGACCATTTTTATATAATTTTTTTTTTGAGACAGAGTCTTGCTTTGTCACCCAGGCTGGAGTGCAATGGTGCAATCTTGGCTCACTGCAGCCTCCACTTCCCTGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGTTCCACAGGTGCGTGCCTGGCTAGTATTTGTATTATATAATTTTTTTGTGAATTGTCTCTTCATGGTTTTTTGCCCATTTTTTGGTCCCTTTCTTATCAATTTTTGTGAGTTCTTCGTATTTATATTAGGCCTTTATTTGTGATATACATTGCAAATGTTTTCTCCTAGTTTGTCAGTTTTTTTAACCTCATGTATAATTTTTCTGGCCATGCAGTTTAAAAAATTACTAGGTAGTCAAATTTATCAATCATTTATTTTATTAAATCTGGATTTTGAATCAGAGATAAACTTTTCCTGGCCAGGTGTGGTGTCTTACACCTGTAATCCCAGCACTCTGAGAGGCTGAGGTGGGGGATCACCTGAGGTCAGAAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCTGATGCCTGTAGTCCCAGCTACTCAGGAGACTGAGGCTGGAGAATTGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCAGAGATCGTGCCGCTGCACTCCAGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAACAAAACGACAAAAAACAACAACAGAAAAGCCTTTCCTGATAGCTAGGTCATTGAGGAATTCACTCATGTTTTCTTCTAGTACCTGATTTCATTTTTCTGCACTTAGATTCCTGACTCATATGGAGTTTATTTTTGTATCTGATGTGAGGCATAGATCTAATTTATTATTTTCCAAATGGCTAACTAGCTGTCTCTAAACCCTTTATTAAAAATTATTGGCCAAGTGCGGTAGCTCACACCTGTAATCCCAGCAGTTTGGAAGGCTGAGGCAGGATTGCTTGAGGCCAGGAATTCAAAACCAGCCCAGACAACATAGCAAGACCCTGTCTCTACAAGAAAATATTGGTCAGGTGTGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCATGAGGTCAGGAGATAGAGACCATCCTGGCCAACATGGTGAAACCCTCGTCTCTACTAAAATACAAAAAATTAGCTGGGTGTGGTGGCGCATGCCTGTAGTACCAGCTACTCAGGAGGCTGAGGCAGGGGAATCATTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCTGAGATCACGCCATTGAACTCCAGCCTGGCGACAGAGCAAGACTCCATCTCAAAAAAAAAAGGAAAAAGAAAATATTTTAAAAATTAGCTGGGCATGGTGGCATGTGCCTTGTAGTCTCAGCTACTTGAGAGGCTGAGTTAGGAGGATTGCTTGAGCCTAGGAGTTCAATACTGCAGTGAGCTATGACCGCACCATTGCACTCCAGCCTGGGCAACAGAGTGAGACCCTGTTTCTATTAAAAAAAAAAAATCGGCTGGGCGCGGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCGAGGCGAGCGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGACCAACATGGAAAAACCCTGTCTCTGCTAAAAATACAAAATTAGCCAGACATGGAGGCACATGTCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGACGGAGGTTGCAGTGAGCTGAGATCCCTCCATTGCACTCCAGCCTGGGCAACAAGAGTAAAAACTCCGTTTCGCCAGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACAAGGTCAGGAGTTTGAGACAAGCCTGGCCGACATGGTGAAACCCCATCTCTACTAAAATACAAAAAATTAGCCTGGCATGGTGGTGTGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGGGAATCACTTGAACCTGGGAGGAGGAGGTTGCAGTGAGCCGAGATGGTGCCACTGCACTCCAGCCTGGCAACAGAGCGAGACTCTATCTCAAAATCAATCAATCAATCAATCAATCTTTGAACTAGTGATTTGAGATTTCACCTTTATCACATTCTAGATTGTATCTTATTTTCATTTATTTATTTGAAATATAGACAAGTCTCCCTGTGCTGCCCAGGCTGATTTCAAACTCCTGGCTGGGCTCGAGCAAGTCTCCCGCCTTGGCCTCCCAAACTGCTGGGATTACAGACGTGAGCCACCATACCTGACCTAGGTTTTATTTTTTAGTTTTATTTTTTCCTGCATCCAGCTAATTTGATTTGATTTGTAGAGACGGGGTCTTGCTATGTTACCTAGGCTGGTCTCGAACTCCTGGGCTCAAGTGATCCTCCTGCCTTGGCCTCCCAAAGTGTTGGGATTACCAGCATGAGCCACGGTGCCCAGCCCCACGTTCTAGATTTCTATGGATAGAGTATGCTTAAGGATGAGTATGTTTCTGGATGTTCGACTCGGCTTTCCTGGTCTGTTGTCTGTCTGTGTACAGCGTCACATTGTTTTAATGATAGAGGCTTTAGCGTACATAGCTGGGAAGGCTAATGTTCTCTTTTAGTTTTTCTTTCCAGTGGTTTCCTGGCAATTCTTGCATGTTTGTTTTTCCATATGAACTTTAGTGTCAACATGCCTAGGTCTATAAAAAAGCTTGGTGGTAATTTTATTGGGATTATGACACTTCAACAAATTAACTGGGAGAATGGACATATTTTTGATGTTGAGTCATTTTATCCAAGGATAAGAAACGTTTTCCTATTTGCTCAAGTCTATTATTGTATCTTTCTTGACTGCTGCAATGTATTCTCTTATAATTTTTTCTATTGGTATCTTATTTTATGTATTTGTAATATCTTATTTTTCTTGAGTAAATTAGTTAATGGCTTGCCGGTTTTCTCAAAACAAATATCTAGGGATTTGATTTATGAAATTATTAGGCCTATTATTTTTCTTTTTTTTGAGATGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCCAGTAGCTGGGGTTACAGGTGCACGCCACCATGCCCGGCTAATTTTTTTATATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGCTGGTCTCGAACTCCTGACCTCATGATCCGACTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTGCCTGGCCTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGAAAGCTCCACCTCCCGGGTTCACGCCATCCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGTACACTGCCACGCCCAGCTAATTTTTTGTATTTAGTAGAGACAGGGTTTCACCGCGTTCGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGTATTACGGGCGTGAGCCACTGCGCCCGGCCAGGCCTATTATTTTTCTATTGTGGTTCATTAATTTCTGCTTTTTTCTCTTAAAAAGTTTGCTTACGTTTTTGTCTGGTTTACTTTGCTGTTCTCTTGCTAGCTTTTTTTTTTTTCAGATAGGGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACAGTCATAGCTCACTGCAGCCTTGAACTCCTGGGCTCAAGCAATCCTCTTCTTGCTTCAGCCTCCCACGTAGCTAGGATCAGAGGTACATGCCACCATGTCCGGCTAATTTTTTTTTTTCGAGACAGAGTCTTGTTCTGTCGCTCAGGCGGTAGTGCAGTGGTGCAATCCCGGCTCACTGCAACCTCCACCTCCACCTCCCAGGTTCAAGCAATTCTACCTCAGTCTCCTGAGTAGCTGGGATTATAGGCGCACACCAACATGTCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCACGTTGGCCAGGCTGGTCTTAAACTCCTGACTTCATGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGAGATTACAGGTGTGAGCCACAGCACCTAGTGAAGGTGTGGTTTTTTTGTGTAGGTTTTACTGTTGTTAGTGTTGTTCTGTATTGTTTGTAGAGGATACGTGGGGAGATTTGGATAAAAGCAACTATCATTATTATCCTCATCAGACTTGTAGGTCTAACTTTTTAATTTTTTAATTTTTAATTTAAATTTTTTTCTTGGTCTTTTATCATTAATTAATTTTTTCGAGACAGGGTCTCACTCTGTTGCCCAGGCTGGAGTGTGGTGACATGATCACGGCTCACTGCAGCCTTAACCTCCCAGGCGCAAGTGATCCTCCTCTCTTAGCCTCCCGAGTAGCTGGGACTCCAGGCATGTGCCACCATGCCCAGCTAATTTTTTGTAGAGAGAGGGTTTTGCCATATTGCCCAGGCTGGTCTTGAACTGCTGAGCTCAAGTGATCCACCCGGCTTGGGCATGAGCCACCTCCCCTGGTCTGGTCCAACTTTTTAAAAGCATTATTCTGCCTGTTGGGTGGAGAATAGACTGTAGGTGGGCAAAGAATGAAGGAAACTAGTGGGTTCAGGAGCTCGAGCTAGAAGTGGTGAGAAGGGTTTGGATTTGGGGTCTATGCTGAAGGTAGAGCCGACAAGATTTGCTAGGATTGGATGGGTAGGGTGAGGAAGTGGGGACAGCAAGAATGACTGGAGGGGTAAGTGGACTCTCACCAGCTGTGTCTCGTGAAGGGGCGTGGCTGGGCTATGAGCTATGCTCCTGAGCACAGACGGCTGTTCTCTTTCAAG
Seq C2 exon
GTTACAAGCCTGATGAAGGGAAACGAGGGGATGCCTGTGAAGGTGACAGTGGGGGACCCTTTGTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180210-F2:NM_000506:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(2.2=3.2),PF0008921=Trypsin=FE(48.8=100)
A:
NA
C2:
PF0008921=Trypsin=FE(18.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)