HsaINT0063312 @ hg38
Intron Retention
Gene
ENSG00000085265 | FCN1
Description
ficolin 1 [Source:HGNC Symbol;Acc:HGNC:3623]
Coordinates
chr9:134913581-134914420:-
Coord C1 exon
chr9:134914385-134914420
Coord A exon
chr9:134913614-134914384
Coord C2 exon
chr9:134913581-134913613
Length
771 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGTCTCCTCTCCCCACACAGGAG
3' ss Score
10.65
Exon sequences
Seq C1 exon
GAGACCGAGGAGAGAAGGGGATGCGTGGAGAGAAAG
Seq A exon
GTGAGCCACCCGTGGGCCCAGGCAGTTGTCTCTGCAGGCTTTGTCCAGGGGAGGGGTCTCAGAGGCCTCAGTCCGCCTGCCCACCGCCCACGTCCCTGTCAATCCAGGCTGTGGGCAGGGAGGGGTGGAAGGAGTCCAGCGGGCTTTGTTGTCAGAATCCACGAGGGCTCAAACCCTGGTGTCTACAGCAGTCACTCCCAGTGGCCAGCAGGACCACATCAGTGCATAGATGGTGACACTTCAATATTTCAATTTCTGTCTTACTTATGCTCATTTATGCAAAAATTGTAAAAGTTTAAAAAAGCCAAATGTGCAAGACTCTAATACACTGTACCACGCTCCACCCACAAACACAAATGAAAACCGGAGCCGGGGGCTGAGGGTCCGCCGATACCTGAGTCCCAAGAAACAGAGGCCAGGGCGGAGGCAGGGCAGGCTTGGAGTGACCCTGCCAGGCTTGAAGAGTTATTCCGCTGTTATCAGTGGCGAAGGCCCCACTAGGGGTCCAGTTCGTCCAGCAGGACCCGCAGCGCCTGCCACAGCCCACCAAGCTCAAGCTGCACAGCAGGGGCCTATGGACAACCATGTGGCTGGTGCCTCTGGGGAAGTCGAGTCTGGCCATCCTTCCCTAGGCCTGTGCCACGTGTCCTGGAGACATCAGAGGAGCTGCCTTTGCCCATTCTCTATTCTGTGCTCAGGGAGCCACTGGGGCTGACCAGGACAAAGGCTCTGATTTCAAGCTTATGACAAGTGTCTCCTCTCCCCACACAG
Seq C2 exon
GAGACGCTGGGCAGTCTCAGTCGTGTGCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000085265:ENST00000371806:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.750
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.7=100)
A:
NA
C2:
PF0139113=Collagen=PD(11.5=58.3),PF0014713=Fibrinogen_C=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development