HsaINT0064765 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr10:124544552-124545694:+
Coord C1 exon
chr10:124544552-124544921
Coord A exon
chr10:124544922-124545476
Coord C2 exon
chr10:124545477-124545694
Length
555 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TCCATGTCTATTCACCCCAGGTT
3' ss Score
7.6
Exon sequences
Seq C1 exon
GGTTATACAGTCCAAAGATAGACGTCTTTGTCATCTCCATTAGAGATGAGGAGTCTGAGGCTCAGAGAGGATAACTAATTTGCCCAAGGCCAACCCATCTAGATCTGTCTGATGTCAATGACCCATCTGTTCACCAATATGTGGGTCTGTAAAAGAGTCTGCATGAAGCCCTTCTTCTTGTGCATGACACACATCGTGTTACAAACACAGCAAGACTGTAGAATTCCATGATCATTAGCTCCAGGCATGCACTGAATTGCGTTCCATCATGACTGTACCACAACCATGGATTCAGACATGCACTAAGCCAAAAATGCCTCAGGATATATTTGTTGACTAAAACTTTAGGGACACAATTAGCCACAATGAG
Seq A exon
GTAAGGACCTTGAACCCACACCTCCAAATTCTATTATGTTATCCATTGTCTGTTCCTTCAAAATTGCTTCCCCTTACCTTTCTCGTGAATAATTGCCATACTATTCTTCTATATCCTGCCACCACTTTTATTTTAAAATCAAGTTTTTTCCTACCCAAGAATTCGAGTATGGCAATTATTGTGAAACACAGAAGTAGGAAAAATCTGGCCGTGATGTCTGTTACATGCTGATCTTTGGGGTGATCTGACTGTTATGAATTTAGTTGCAGAGTAAATTAGTATTTCCTAATGTCCTATGTAGGTTGTGATTGGCCAAAACCATTATAATTTTTAAACTTCTGTTATGAGATTGTAGCTGAAAGCCCCACACATTCCTTAGCCAAAGAAAATAGAGTTGTGATAGGTCATCTGAAAAAATTAATTAGTATTTTACATTTCAGTGTGCAATTTAAATATAATCCAAATATGTAATCTCTATGATTGTCACACTTTTTTAGCATTAAATTTTAGGAAGTTTCTAATCTGCCACTACCCCTCCATGTCTATTCACCCCAG
Seq C2 exon
GTTGGAAGATATCCTTGGATGTCCCTATGACTCCGTTGAAATCTTCAATGGTCCCAGGATTGCCTCGCTCTCCATGGGGAAGTTCTGTGCCCCTGAAACTGTGATATTCTTCTCCTCCTCACACATCATGACAGTGGTGTTCCAAAGTGATTCTATGAAAACCAACACTGGCTTTTATGCTCTTTTCAATGCCATTCCTCAGGGTGAAAGGGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
-FLJ46361:NR_003570:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTAGCTCCAGGCATGCACTG
R:
CCTTTCACCCTGAGGAATGGC
Band lengths:
348-903
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)