HsaINT0064776 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr10:124524300-124525886:+
Coord C1 exon
chr10:124524300-124524329
Coord A exon
chr10:124524330-124525838
Coord C2 exon
chr10:124525839-124525886
Length
1509 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TTGTTTTGTCTCCGTTACAGCTC
3' ss Score
10.31
Exon sequences
Seq C1 exon
GTGCCAAGTCTTCAATCACTTCTCCAACAG
Seq A exon
GTAGGACCAACTTCCCTTTGTTAACTAGATGAAACACTTGTGGATATTTTCTACTGATCTTAACCAAGAGCCAAAGATCACCTCCTACCTCATCTTACAAGTCTTCTTTCTAGTTCATCTTGCAAGATATCCAGCTGACCTCCCTGAGGAAAGCAATGTACTCTGCGATTGCCTCCACAGAGCCTTCTTAACCTGCAGGCTCAAACTGCAGGGACTGGCATGCACAGCTTCTTACGAACAAAGAGCAGCATCCAAGCTCCCTAAGTGGTACAAGCCTGCAGGAACCTCTGTACATCAGGAAAGAAAATAAAAGTCACCTTGAATATATTAGTCCTCGTCTGTGTTAGGACTAGTTCCATTTTCTTGCCCTTTACTGCATATGTGAGTTGAAAGGTATAGAAGAATGATCAACATCACCTTTCTTTGGCATCTGTAACACCTGAATTGCTAGCTTCCAGGCAATGAAACCACATCATTAACACGTGATTGAACCTAGTTAGTCAATTTAAGAAAATAATACTCTGTGATTCAGGACACTTGATATTTACAAACTGCCACCATACACGTGATTTAATTTGATCCTCACAATATCCAGTGAAGTTGCCAACACAGAGACTATCTCCATTTCTCAGATGATAAAACTAAGGCTCAAAGAAGCAAAAGAGCTTTATTTGTTTTTCTTACATCTTATCTGCTGTACTCCTTTAGAAAACATATTGACACATAGTAGTTGTTCAGTAAATGGTGCCAATGTTTATCCCGGTATTTCAAACATCCAACTACCTGACATGGAATTGAAAAATGGGAAGTCGATACAAGCCATGCAACATTTATGCTTGGTAATAAATCATCAGGCTGATTGCTGCCAGATTCTAAACCACATGTTCAAATAAGTGTGATATCAGTCTTCTGAGAAATGTCACACAGATAATAAAGTCAGTACTTTCATATTTTTCACCTGGGGACACTTTCTGTCCATAGTACTTCACTCCTGAGATAATTTGGCTAATAAACACCAATCATGGTGGTCCCTGATGTGTGTCTTTGTACAGAATCAAAGACATATAAAGTTTAAATTTGGATGGATACTTAAGAACGTACAGCAAAAATTCTGAGTTTAATTTCCTCCTTATTCCCATATTTTTACATCAGAAAAGAAGACAAAATGAGCAATAAAAATGTAGACTTCATACAGTTACCTTATTTTACCTGAATCTTGTTTCAGTAAGAAATGAGCTGGTTAGGGTTAGGATCTTTGAAAACAAGTAGACCTGGCTTCATATCCCAGTTCAGACACTTCCAAGCACTGAGCTTCTGGGCAAGCAACTCACTCTCCCTGAGTCTTGGTTTCTGCATTTGTAAAATAGGAGGAAATAGTCCATCCCTTACTTGGTGGTCAAGAAGTTAAAACAAGGTCACCCAGGCAGAGCATTTGACCTAGTGTCTGGCAAAGAGATAGCATATGATAAATGCGATCCTAGCTACCGTCTTGTTTTGTCTCCGTTACAG
Seq C2 exon
CTCCTGAGTCATTTGCTGCTCCTGGGGCAACAAAACCCACAATTTATG
VastDB Features
Vast-tools module Information
Secondary ID
-FLJ46361:NR_003570:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)