HsaINT0064779 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr10:124530559-124531761:+
Coord C1 exon
chr10:124530559-124530630
Coord A exon
chr10:124530631-124531613
Coord C2 exon
chr10:124531614-124531761
Length
983 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
AAATATATTTCTGCATTTAGAAA
3' ss Score
5.28
Exon sequences
Seq C1 exon
CCCATGAGAACCTGCTCCCCACATCATTGGTGATATCAGTGGCTCAACACCCACCGTCTTCTGCACCACCAG
Seq A exon
GTAGAGCTGTGTCTTTTTGTATTATGCCTTCTGAAAAACTTCATTCATTTGACAATGATGGATAGACAGAGAGGCAGAACAGACAGACAAGCGGGTTGAGAAACAAACGGACAGGTAGGCAGACAGGTAGATACAAAATCTTATCAGTATTAGGGGTATTCCAGGAGTGGATGACTAATGGCAACTTCTTTGTACTTAACAGTGAGTTTTTAAGAATGCAATTTGAATAAATTACAACTGATAGTGGATGGACTCTGTCATCTTCATATACACAGAAGCTCCACGTTGGCTCAGATTAATTGGGAAAACTGAAGCAGTACTTTACTCATTACTACTAGTGACTGGGCAAAAGTCAAAGCTACAGAGCCCACAACTAGCCAGAGAAAAACGTTCTGGCTGATATCGCGTAAGAGCTCTTTCCAGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTGGGAGGCCGCGGTGGGTGGATCATGAGGTCAAGAGAGCAAGACCATCATGGCCAACATGGTGAAACCCCGTCTCTACTCAAAATACAAAAATTGGCTGGGCATGGTGGCGCGTGCCTGTAGTTCCAGCTACTCAGAAGGCTGAGGCAGGAGAATAACTTGAACCCAGGAGGCGGAGCCAAGATCATGTGATTGCACTTTAGCCTGGTGACAGAGTGAGACTGTGTCTAAAAAAAAAAAGGAAAAAAAAGAGCTCTTTCCAGCAAGCCCATGTAGATGGCAGAATTCTCAAAAGAGATGAGAAATGTTTCAAAATTCAGATGCATTTATCCCTTAATTTCTAAGTTTGCAAGGCTTTTTAGACTAGTTGATAACTTCTGATATGTCCTAAGACATAATCACAAAGTAATGACCAGTAAAATCCTTTTTGGAAAAAGAGTTTTTTTAAAAAAAGATGTGAATTACAAAATTAGTAAACTGAACAATCAAACAATCGAAATTCTAAAATATATTTCTGCATTTAG
Seq C2 exon
AAAAATCTCGGTGTGGTGGCATTATTACCAACTCATCTGGAGCGATTAGGAATCCCCCACAGAATGAAATGCATGACAACATCACTTGTGTGTGGGAAATCAAGGCAAATGCATCTGATCATATACTGCTGGCATTTCCACATCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
-FLJ46361:NR_003570:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACCTGCTCCCCACATCAT
R:
TGGAAATGCCAGCAGTATATGA
Band lengths:
206-1189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)