HsaINT0066566 @ hg38
Intron Retention
Gene
ENSG00000107164 | FUBP3
Description
far upstream element binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4005]
Coordinates
chr9:130620354-130622810:+
Coord C1 exon
chr9:130620354-130620458
Coord A exon
chr9:130620459-130622707
Coord C2 exon
chr9:130622708-130622810
Length
2249 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGC
5' ss Score
9.12
3' ss Seq
TTTGGTTTCTCTGTGCCTAGGTA
3' ss Score
9.21
Exon sequences
Seq C1 exon
CAAGCAAGAGAAATGGTACTAGAGATTATCCGAGAAAAAGACCAAGCTGACTTTCGGGGTGTACGCGGCGATTTCAACTCTCGAATGGGAGGAGGCAGTATAGAG
Seq A exon
GTATGCTTAAATTACAGGTTAGTAGGCAAATGAGATGAGGACTAAAGTTGTAGGTCACACTTTTGTTAGCTCTTTAACCCTGAGCAAGTTAGTTAAGTTTTGTCTCAAAACCTTAAGAATTCTCTGGCTCCTTAGGGTGGGTGTGAGGGTGGACTGGAACAGCAGCAGCCTGCAGTGAGGGAGCTGGCTACACTTCAGGGCGTGGGGCCATTTCCCTCGGTTTTGAAGCTTTGCTTTAGAGGTTAACCAGTTGCCCAGGTAAAAACCAAAGTTCAGGTTTTCTTGGTGATGTATATCATGATTCTGTCAAACTCAGCAGCCTGTGTTTATTGATGAGGTTGCAATGGGGTCAGAATCTATCCTAGAGAATGAAATTTTGTTGTATGCGACAACATGGATGAACCTTACAAACAGTATGCTCAGTGCAATAAGACAGATACAGAACAAATATTGTACGATTCCACTTATCTGAGGCACCTAGAAGAGGCAGATGCATACAGGCAGAAAGTAGCAAAAGCTGTCAGATGCTGGGGGAAGGAGGAGTATTGTTTAATGGGTACAGAGTTGTTGGGGATGATGAAATGTTTTGGATATGGATGGTGGTGATGGTTACACAACATTGTGAATGTATGTAATGTCATTGAATTGTGTACTTACAAGTGGTTAAATGATAAATATTATGTGTATTTTAGCCACAATAAAAGAAAAATGAAGGAAAAAAATGCATTTTAAAGAACCGCTAGGGCTATGCATGGTGGTTCACGCCTGTAATCCCAGTGCTTTGAGAGGCTTAGGCAGGAGTACTGCTTGAGGCCAGGAGATTGAGATCTGTCTGGGCAATATAGCCAGACACCACCTCTACCAAAACAAAAAAAAAAGTATTTTAAATTAGCCTAGTGTGGCACATTCCTATAGTCCCAGCTGTTCTAGAGGCTAAGGAGGGAGGCTCACTCCTCCCAGGAGATCGAGGCTGTAGTGTGCTACAGTTAACACCACTGTAACCCAGCCTGGATAACAAGTCCAGCCCAGGTAACAGTGTGTATGGTGTGTTTATTGGAAGGCAAAATTACTATTTTTCATCTTTTATCTATAAGGCTTATTCATTTTTATAACCATTTTGATCAAATCTCAAATTGGATGCATTTAACAGTTAAGAATGCAGTTCAGGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGTGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGCCAATGTGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGTGTGGTGACGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGTGCTTGCAGTGAGCGTAGATGGTGCCACTGTACTCCAGCCTGGGCGACAGAGCAAGACTCTGTCTCAAAAAAAAAGAAAAAAAAAAGAACGCAGTTCAACCACAGTATTATTCCTAAAAGGGAAAAATGTCCTTTATTATATCATTTCCAGGAATGCACTATAATAAAAACTAAGTTGCGTGTTAAAAAAAAATGTGTCCTGGGCCGGGCGTGGTGGCTCGCGCCCATAATCCCAGCACTTTGGGAGGCTAAGACAGGCAGATCACTTGAGGTCAGGAATTCAAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAAATACAAAAATAAACTGGGCATGGTGGCGGGTGCCTGTAATCCTAGCTACTCAGGAGGCTGAGGCAGGGAGAACTGCTTGAACCTCAGGGGTGGAGGTTGCAGTGAGCCAAGATCGTGCCACTGCAGGCTGGGCAACAGAGCGAGACTCCATCTCCAAAAAAAAAAAAAAAAAAAAAAGTGTCCTGGCCAGACACAGTGGCTCACGCCTGTAATCCCAGCCCTTTGGGAGGCCGAGGTGGGCGGATCACCTGAGGTCTGGAGTTCAAGACCAGCCTGGCCAGCAAGGTGAAATCTCATCTGTACTAAAAATACAAAAATTCGCCGAGCATAGTTGCCTGTGCCTGTTTTCTCAGCTACTTAGAGGCTGAGGTGGGAGAATCATTGGAACCCGGGAGGCAGAGGCTGCAGTGAGCTGAGATTGTGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCAGTCTCAAAAAAAAAAAAAAAGTGCCCTTTAAAAAGACAGGTTTGTGAAAAGTTCTGATGTGGTTTGGTTTCTCTGTGCCTAG
Seq C2 exon
GTATCTGTGCCTAGGTTTGCTGTGGGGATTGTAATAGGAAGAAACGGGGAAATGATCAAAAAGATCCAGAATGATGCTGGTGTGAGGATTCAGTTTAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107164:ENST00000319725:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.171
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PD(7.7=14.3),PF0001324=KH_1=PU(3.2=5.7)
A:
NA
C2:
PF0001324=KH_1=FE(54.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development