HsaINT0069497 @ hg19
Intron Retention
Gene
ENSG00000250571 | GLI4
Description
GLI family zinc finger 4 [Source:HGNC Symbol;Acc:4320]
Coordinates
chr8:144356874-144359101:+
Coord C1 exon
chr8:144356874-144356972
Coord A exon
chr8:144356973-144358066
Coord C2 exon
chr8:144358067-144359101
Length
1094 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TCTGCCGTTTCTCATTTCAGACT
3' ss Score
10.14
Exon sequences
Seq C1 exon
GCTCCCCTGGCTCCAGCCCTAAGGTGCTCTCCCAGCCGTCCGACCTGGATCTCCAAGACGTAGAGGAAGTGGAGATCGGCAGAGACACCTTCTGGCCCG
Seq A exon
GTGAGTGAGCAGAATCGGGTTACTGGGGGACCAGAGCTCTGCGCGTGCCAGGCTCCTCACAATGCCCACCTCTGTGGCACCCCCAATGCTGGCACCACCCCCTTCCTGGGGCCCCTTTTCTTCCCTGGCATCAGCTCACCTCTGCCCCGTGGCCCCTCCCCCACTCTAATGCCAGTCCAGTTACTGATGCTTCCCGAGGCGGTGACTGCAGCCCACAGCCACCTGCGCCAGTGGCCCCACGTGGACTCCTGCCGGCCCCAGCTGGACACAGTGAATCAGGAACTCCTCCCTCCCCTCCACCTGCCTTGGGCTGGGGCTTCTGGCTCAGGGCACCACTGTCCCCCCAGATCCACGAGTTATCCTGTGTCCCCTCCTCCTCCTGCATCCCCTAGATGGCCTCCCCTCAGCCTGGTTGGAGCTGTGTCCAGGTCCCCTGCACCTCCCCCTTGAGAAGCTCCCAGGGTTCCCTCTGGGCGATGTTAGTGATATGGCTGGATTTAACAGTGCTGAGCCCTCGCCCACATCTGGGCGGCCCTGGGGTGGGGAGCAGGTGTCTGAGGTCAGGTCCCTGGAAAGAGACCCTGGGCCAGAGATTTGCGTGGGAAGCTCCTGGGGTGGGCATGGGAGCTGGGCGGCAGCACACTTGCCACCGAGGCCTGGGGCAGCCCCATGAGGAGCTGTGCCCATATGGACCACATCCTCGGCAAGGGCTTTGAGGCGCCCTCTGGAGCTCTGGCGTCCCCCAGGCTCCGGGTCCTCACCAACACTTAGTGCTTCCTCCTGGCTAAGGGTGACCCCATGGTCTGTCTTGCCACTGTGGCTCCGTGCACCGGCACGGCCGCCGTGGTGACTGTGGATGGTCCCAGCAGCTCTGGGTCACCCTGCAACGCCCCCCACCCCTGTGTCTATGTCAGCTCTCCTGGGCACGGCACTCCGAGCCCCTGTCCGCTTGTCTCCCATCCACTGGGTGCCTGGCCCCTCCTTGTCCCCTCTAAGCCCCCCCGTCCAGCTCTGCTCTCACTCCCCGTCCCCGTCCCTCCGTGCCACGGTGGGGGCATGCGGGTACTATCCGCCTCTGCCGTTTCTCATTTCAG
Seq C2 exon
ACTCCGAGCCCAAGCCGGAGCAGGCTCCACGCTCTCCTGGCTCTCAGGCCCCTGACGAGGGGGCGGGCGGGGCGCTGCGCAGCCTCCTGAGGAGCCTTCCCCGCAGGGCCCGGTGCAGCGCCGGCTTCGGGCCTGAATCCAGCGCGGAGCGGCCGGCGGGCCAGCCGCCTGGGGCCGTCCCTTGCGCCCAGCCGCGGGGCGCCTGGCGCGTGACGCTCGTGCAGCAAGCAGCGGCCGGGCCCGAGGGTGCGCCCGAGCGGGCTGCCGAGCTGGGAGTCAACTTCGGTCGGAGCCGGCAGGGCAGCGCGCGGGGGGCCAAGCCGCACAGGTGCGAGGCCTGCGGCAAGAGTTTCAAGTATAACTCGCTGCTCCTGAAGCACCAGCGCATCCACACGGGCGAGAAGCCCTACGCCTGCCACGAGTGCGGCAAGCGCTTCCGCGGCTGGTCGGGCTTCATCCAGCACCACCGCATCCACACGGGCGAGAAGCCCTACGAGTGCGGCCAGTGCGGCCGCGCCTTCAGCCACAGCTCGCACTTCACGCAGCACCTGCGCATCCACAACGGCGAGAAGCCCTACAAGTGCGGCGAGTGCGGCCAGGCCTTCAGCCAGAGCTCCAACCTGGTGCGCCACCAGCGGCTGCACACGGGTGAGAAGCCCTACGCCTGCAGCCAGTGCGGCAAGGCCTTCATCTGGAGCTCCGTGCTCATCGAGCACCAGCGCATCCACACTGGCGAGAAGCCCTACGAGTGCTCCGACTGCGGCAAAGCCTTCCGCGGCCGCTCGCACTTCTTCCGGCACCTGCGGACCCACACGGGCGAGAAGCCCTTCGCGTGTGGCGCCTGCGGCAAGGCCTTCGGCCAGAGCTCCCAGCTCATCCAGCACCAGCGGGTGCACTACCGCGAGTAGCCGGGCGGGGGCTCGGGGCTCGGCCTCCTACCTGCCCCCAACCCACCCTCCACCCCGTCCCCCACGGTGGGCACTGCCCAGCACCGCATGCCACGTGTCCGGAATAAATTCTTTTTGATTGTTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000250571-GLI4:NM_138465:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.902 A=NA C2=0.331
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.6)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGACCTGGATCTCCAAGAC
R:
ACCGAAGTTGACTCCCAGCTC
Band lengths:
348-1442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)