HsaINT0074007 @ hg38
Intron Retention
Gene
ENSG00000148702 | HABP2
Description
hyaluronan binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4798]
Coordinates
chr10:113584148-113585938:+
Coord C1 exon
chr10:113584148-113584282
Coord A exon
chr10:113584283-113585792
Coord C2 exon
chr10:113585793-113585938
Length
1510 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCTCTGCACCTTCCCCACAGGAA
3' ss Score
12.18
Exon sequences
Seq C1 exon
CATTGCTCAAGTTAAAGCCAGTGGATGGTCACTGTGCTCTAGAATCCAAATACGTGAAGACTGTGTGCTTGCCTGATGGGTCCTTTCCCTCTGGGAGTGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAG
Seq A exon
GTGAGTCGGCCATGCACTCTCCCATGACTTAGGTGAACTACATCAACCAGAGAAGAAAGGCCAAACTCAACTGCCCTTTTGAAGTTGAAATGAGTGTCATATTCAAAATGCATCAACCAAAGAAAGCATCCACCTCATTGATCAAGCTCTGGTTAAATTCCTCCACCTGCAGGGAGCCTTCCCTGAGTTTCTCTGATCTCCATATCTGTCCCTGGCCCTACCCCTAAATACTTGAATTTTACCAAGCATTGACCCTGCATTTATGGAGCTCTTGCTCCCTTCCTAGTTAGATTGGAAAGAGGAAAGATCATGGATTTTTGAGTCAGACAGACTGGTATTCAATTCTTGACTTTGTCACTTGAACAACTGAGTTTTAGTTTCTCAATAATCATACTTACTTCCCGGGTTTGCAAGCATGATCACAGGGGATGATAGAATTCTACAGAGACATTCATTAAGTCAGCCCTTAGAAGATGGGGGTCAGGTCCCATTCATCTCTGTCTGTCTCACAGTACTTTGCTCGGGGTTCTCCACACAGTAGACATTCTATAAAATTGTGTTAAATCCAGCTGTTGATTTGTCTTTAGGATTTGGTCTAATTTTTAAAAGTAACCAAAGGATTACTTTCCTCATAGTACTGGCAACATTATACCCACTACTACAAAAAAAATTCAGAAAGGTATTTCATGTCTTTTCCAAATACTCAAAATATATTTCTCTTCCTTCGCAAATCCTGTCCTTAATAATGAATAGCGAGAATCACGATAAATAAGTCTGCAGAAATTCCACATATCTGAACAAAGTGAAATGTAATATACAACTTTGAGTCTTTTGAGAAAGATGTCTGGCTAATTGGATTTAGGGTCAGCCAGTAAACTCATTTTACAGCCATTTTCATTGTAGTCCATCTGAACTTGTCAACCTCTATTCTGCTCAATATGGTCTGGTCAGCATGGTGATGTCTCAGTTGGGAATCTTTTGGAGCCTCAGGTTAGAATTATTTTGCTTTTCATAAACAGGCTTCTAAGACTTTATGTTCAAAGCCTTTATGTTCTCTAAGACTTTATGTTCAAAACATGTTTTGATTGATGTCATTATCTTTACAGGGGAAAATGCCTGCTCTAGGAAGCAGGTAGCCTACTGCGCAGGGCACTTCATCCATCCATCCATCCATTCATTCACTAAGAATTGTGCCAGCCCTTTTGTTAGGCCTTGGGAATTTTAAAATGGTTAAGAGAGCATCTATTTCCTCCTGAACCTCATGGCCTACCTGGGGAAAGAGAGGAGGGAATATACTATCTGGTCCATGTATCATGACCAGCACAGGATTGCAGGTCTGCACTGGCATGGTGAAGGCTAAAGATGAGGCTTTTCTGCCCATATCCTGGAAAAACCCTTCCCTTCTGAGCTAAGAGTTGGTGGGCTTCTCCCTGACAATCTGGTTTCTGGTGGGGTTGGTGCCACCCTGGTCCCCACAGTAGTGACTCTTTTCTCTGCACCTTCCCCACAG
Seq C2 exon
GAAAAGGGTCCCGCCAGCTCCTGGATGCCAAAGTCAAGCTGATTGCCAACACTTTGTGCAACTCCCGCCAACTCTATGACCACATGATTGATGACAGTATGATCTGTGCAGGAAATCTTCAGAAACCTGGGCAAGACACCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148702:ENST00000351270:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAAGTTAAAGCCAGTGGA
R:
CTGGCAGGTGTCTTGCCC
Band lengths:
278-1788
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development