HsaINT0074016 @ hg38
Intron Retention
Gene
ENSG00000148702 | HABP2
Description
hyaluronan binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4798]
Coordinates
chr10:113581876-113583358:+
Coord C1 exon
chr10:113581876-113582131
Coord A exon
chr10:113582132-113583215
Coord C2 exon
chr10:113583216-113583358
Length
1084 bp
Sequences
Splice sites
5' ss Seq
CGAGTAGGT
5' ss Score
5.76
3' ss Seq
CATCTCATTTTCCCTTGCAGCAT
3' ss Score
11.22
Exon sequences
Seq C1 exon
ACGTTGCCTACCCAGAGGAAAGCCCCACTGAGCCATCAACCAAGCTTCCGGGGTTTGACTCCTGTGGAAAGACTGAGATAGCAGAGAGGAAGATCAAGAGAATCTATGGAGGCTTTAAGAGCACGGCGGGCAAGCACCCATGGCAGGCGTCCCTCCAGTCCTCGCTGCCTCTGACCATCTCCATGCCCCAGGGCCACTTCTGTGGTGGGGCGCTGATCCACCCCTGCTGGGTGCTCACTGCTGCCCACTGCACCGA
Seq A exon
GTAGGTGCCGCTGGGAGCAGGGACCAGGGTGGCTTGAGTGGCTGGGGGTGCTCTCCCCTTCCCCTCTGAGCAGCATCTTTGTAGCTCTGTCAGGATTAGGGGGTCTGATCTGTTCAAGGGCAAAAGAAGGGCTCCTGAAAGCCAGAGGGAAAATAGCTACCATGTCTGGAATGTTTACCATGGGCACTGCATTTATTATATGACATTTAATCCTTAAAGCTGTCTGCTGGAAGACAAGCTGAGGAAGGTCAGGGATTTTTATCTGTTTTATTAACTGTAGGATCTCCAGTGTCTTGAGCAGGCCTTTGTACATAGCAAGTGCTGAGTAAATATTTGTGGAGGAAAAGAGTTTATTGTTATTCCCTTTTTGTAAGTGAGGATCTTGAATCCCGGGATTCTTCCTTTACCTTGCCTGAAGTTGTATGGAAAGTTAAGTGGACAAGTAAGATGGAAACCCCATTCTATCTGCTTCTTTGACTTCTTTTGTCCTGCCCTGAATAGAGGAAAGCATGCTCCTTTGTCTGATACCATCACCAATGACCCTTCTGAGTCAGGTGTCTTCATCCATGCCTCCTGTGTGCCTTAGAGAAGCAAGTAACTTCTGGGGAGCTGAAGAGTCACCCCCTCTTCTGAGCTCCCTGTGCTCATGGTCAAGGCTGGTCCAACAAAGTCTGGGTTTTGGAGGTGGCCATGAAGGTCTTCCAGTTCACCTTATAGTAAATGATTTCTCTGGGATTCTAGGAGGTGCTCCTCAAGAGAGGTCAAGCAGGCAAACATTAGCACCTGCCAATGGATTTTAGAAGATTGGTTCAAGATGGCAATGGCTGTTTCTTTGGAAGGCCTAGGGAGAATGGGAGGTCTCCCATGAGAAGTGGGTAAAAGTTATAGCTTATATTTGGAGCTTGCTTCTGTTAATAAAGCACTTCCCTTACATAATCTTATTTGGACCCTACCACAGCAGAGTTCTGTGAGTGAGACGAGGGTTACAAATGAGGAGGCTGAGTCTGCAGAAGGTCAGATTTGCCAAAGGCCACACAGCTGAGCAGAAACAGTGCCTTCCTGACCATCTCATTTTCCCTTGCAG
Seq C2 exon
CATAAAAACCAGACATCTAAAGGTGGTGCTAGGGGACCAGGACCTGAAGAAAGAAGAATTTCATGAGCAGAGCTTTAGGGTGGAGAAGATATTCAAGTACAGCCACTACAATGAAAGAGATGAGATTCCCCACAATGATATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148702:ENST00000351270:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.5=59.3)
A:
NA
C2:
PF0008921=Trypsin=FE(20.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTTGCCTACCCAGAGGAAA
R:
TCTCCACCCTAAAGCTCTGCT
Band lengths:
342-1426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development