HsaINT0075895 @ hg38
Intron Retention
Gene
ENSG00000019991 | HGF
Description
hepatocyte growth factor [Source:HGNC Symbol;Acc:HGNC:4893]
Coordinates
chr7:81705647-81706427:-
Coord C1 exon
chr7:81706287-81706427
Coord A exon
chr7:81705754-81706286
Coord C2 exon
chr7:81705647-81705753
Length
533 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
ATTGTATTTTGTGTTTTCAGGCC
3' ss Score
9.09
Exon sequences
Seq C1 exon
AGACTTGAAAGATTATGAAGCTTGGCTTGGAATTCATGATGTCCACGGAAGAGGAGATGAGAAATGCAAACAGGTTCTCAATGTTTCCCAGCTGGTATATGGCCCTGAAGGATCAGATCTGGTTTTAATGAAGCTTGCCAG
Seq A exon
GTTAGTTACTTTAGAAGATTTTGTATTTTTCACCTGGACAAGAATTGTTGGAGCATTTTCTTCAGCTGTGTGGCAGTTCGTTCTCTCTCATACAGATGCATTATAAACATATGTTACATGCTGTATATATATGTATATATGCGTGCGTTTGGGTCTCTCTGTGAGTATAGAGAGAAAGGTATTTGCAAAACTGTAAAAAAATGAATAACTAACATTGGGCCAACAGTCTGATCAGTCTGTTTTAAAATGGAAACTCAGCAGTTATTTGATAACTTTCAAATGTAAAATAATTATTTTAAAAAATAGCATTGACCATTTATTCTTAAATATTGGCAAATACATGACTCATTTCTTTACTACCTATTCCAAATGTCATCATTACATTTGGACATTCCCACCTTTTTTTTTTTTTTTTTAAGAAACAGGACTTCATTCTCTGTAAATGCCATATTAAACATGAACACTACATTTAATATGTTAATTTTGTGTTGAATCCAGTTGAGAGTACTTACCATTGTATTTTGTGTTTTCAG
Seq C2 exon
GCCTGCTGTCCTGGATGATTTTGTTAGTACGATTGATTTACCTAATTATGGATGCACAATTCCTGAAAAGACCAGTTGCAGTGTTTATGGCTGGGGCTACACTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000019991:ENST00000222390:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(16.2=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTGAAAGATTATGAAGCTTGGC
R:
CCAGTGTAGCCCCAGCCATAA
Band lengths:
246-779
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development