HsaINT0082832 @ hg38
Intron Retention
Gene
ENSG00000160255 | ITGB2
Description
integrin subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:6155]
Coordinates
chr21:44889276-44890222:-
Coord C1 exon
chr21:44889978-44890222
Coord A exon
chr21:44889496-44889977
Coord C2 exon
chr21:44889276-44889495
Length
482 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
CGTGCTGCCCCGTCTTCCAGGGA
3' ss Score
10.77
Exon sequences
Seq C1 exon
GTGTGACACTGGCTACATTGGGAAAAACTGTGAGTGCCAGACACAGGGCCGGAGCAGCCAGGAGCTGGAAGGAAGCTGCCGGAAGGACAACAACTCCATCATCTGCTCAGGGCTGGGGGACTGTGTCTGCGGGCAGTGCCTGTGCCACACCAGCGACGTCCCCGGCAAGCTGATATACGGGCAGTACTGCGAGTGTGACACCATCAACTGTGAGCGCTACAACGGCCAGGTCTGCGGCGGCCCGG
Seq A exon
GTGAGCCCGTGGGTCCCTGCTGGACAACGGCCGTCCTGCGGCACAGACTTGGTGTTGGGGGGTGCGTTCTGGACCATTCAACGAGTGGAACAGAAAGGGGGGATCCTGAGGACAGACAGTGCAAGTCTCGCCCAGCCACCGGGCGTCAGCAGGAACTTGGATGGCCCTGCACCCCGCCCTGCCTCAGTTTCTGTGTCCATGAGGACAAGGCGTCCTTGTGGGGAGGGCCCACAGGAGGAACGGTCATAGCCCTATTGAGGTCCCATTCACAGCAGGGCAGGGGAGGTCCAGACTGGCCAGGAGGCGGCCACGTGGCTGGCGGGGGCAGAAGGGCCTGGCTAGTGGCCCCATGCCTTTTGCTCAGGAACATCCCCCAGGCTGGAGGAGGCAGGCGGGCCGGAGGGAGCAACCGCAGTGGGGTTTCGGGCGGGTCTCGGTTCCCAGGCCAAGCAGGAGCTTAGCCGTGCTGCCCCGTCTTCCAG
Seq C2 exon
GGAGGGGGCTCTGCTTCTGCGGGAAGTGCCGCTGCCACCCGGGCTTTGAGGGCTCAGCGTGCCAGTGCGAGAGGACCACTGAGGGCTGCCTGAACCCGCGGCGTGTTGAGTGTAGTGGTCGTGGCCGGTGCCGCTGCAACGTATGCGAGTGCCATTCAGGCTACCAGCTGCCTCTGTGCCAGGAGTGCCCCGGCTGCCCCTCACCCTGTGGCAAGTACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160255:ENST00000355153:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF079748=EGF_2=WD(100=41.9),PF079657=Integrin_B_tail=PU(5.1=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAAAACTGTGAGTGCCA
R:
GACCACTACACTCAACACGCC
Band lengths:
347-829
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development