HsaINT0082836 @ hg38
Intron Retention
Gene
ENSG00000160255 | ITGB2
Description
integrin subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:6155]
Coordinates
chr21:44910284-44910785:-
Coord C1 exon
chr21:44910725-44910785
Coord A exon
chr21:44910373-44910724
Coord C2 exon
chr21:44910284-44910372
Length
352 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CAGCCGGCCTCGTCCCTCAGTCC
3' ss Score
5.18
Exon sequences
Seq C1 exon
GACATGCTGGGCCTGCGCCCCCCACTGCTCGCCCTGGTGGGGCTGCTCTCCCTCGGGTGCG
Seq A exon
GTGAGTTCTGTGTTCCACGGAGGGGACTCCACGCGTGACATTCCAATCAGGGAGAACAGGGCCTGCCCTCACTTTCCCATAGACAGAAGTTCCCGGGAGGCTGGGGAAGGACCTTGCCACTGGGGGTAGGTCGGGGACTCAGGCCTCGTCTCCGCACGTGCCAGGAGGCTGTAGCTGTGCTGTTTCCCGAGGGCCCCTCTTTGCACCTGGGGGTGGTGGCGAATGCGGGGTCTCCTCCTGGAGGCTGCCTCCCTGTCTTTTTGGGCCTCCTCTGACCTTCCTGCTCTACTCCCCCTTGGGTGTGGGCAGGGCGGCCCAGAGCACCCACTCACCAGCCGGCCTCGTCCCTCAG
Seq C2 exon
TCCTCTCTCAGGAGTGCACGAAGTTCAAGGTCAGCAGCTGCCGGGAATGCATCGAGTCGGGGCCCGGCTGCACCTGGTGCCAGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160255:ENST00000355153:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0143720=PSI=PU(83.3=83.3),PF0036213=Integrin_beta=PU(35.4=56.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development