HsaINT0084338 @ hg38
Intron Retention
Gene
ENSG00000089558 | KCNH4
Description
potassium voltage-gated channel subfamily H member 4 [Source:HGNC Symbol;Acc:HGNC:6253]
Coordinates
chr17:42156895-42160435:-
Coord C1 exon
chr17:42159731-42160435
Coord A exon
chr17:42157119-42159730
Coord C2 exon
chr17:42156895-42157118
Length
2612 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
CTGTTTCTGTCTCTCTGCAGGCT
3' ss Score
13.87
Exon sequences
Seq C1 exon
ATCTCTCGTCTCAATCAGGAGGTGTCTCAGCTTAGCCGGGAGCTGCGGCACATCATGGGCCTGCTGCAGGCCAGGCTGGGTCCCCCAGGCCACCCAGCAGGCTCCGCTTGGACCCCAGACCCTCCTTGTCCACAGCTGAGGCCACCATGCCTCTCTCCTTGTGCGTCCAGACCACCACCCAGCCTCCAGGATACTACGCTTGCTGAAGTTCACTGCCCAGCCAGTGTGGGGACCATGGAGACAGGGACTGCGCTCCTGGACTTGAGACCTTCCATATTGCCCCCCTACCCCTCAGAGCCTGACCCTCTGGGACCCTCTCCAGTGCCAGAGGCCTCACCCCCAACCCCAAGCCTCTTGAGGCACAGTTTCCAGTCCAGGTCAGACACGTTCCACTGACCCTGGCCCAGGGCCCAGGCCTGTCTGGGGTGGGCGCTGCCGCTCACCACTCAGGGAGGACCTGGGCCCCTTGGCTTCCTGCCTTGGGGTCAGCAGCCACCAGCTGGCCTGGTTGGCTCTGGATTTCTGGACTTTTTAATGAAGCGTGGTTACCTCTGACGCTATTCCCTTTTCCAAGCCTTCCCCAACCTCCCCCTCTGTGAGGGGAGCCACCTGAGGGCTGTGGAACCCAGCAGGCATGAGATGAACCGCAGTGCCCATTGGGCTGGGCAGATGAGATCCTACTTTCTCCCCAGGACCTGGAGGCAG
Seq A exon
GTAGAGATGGGGGAGCAGAGGGGATGGGCAAGGGACCCAGCTCCAGCCTAGGACATGAAGGGAAGACCAGACAGGATCTTAGCGTCTATAGCAAGAGAGACAGGTTGTAGGATTTTGCCTGAAGATAGCTTAGTGATATTGTGAGGTCTTCTGTCTCAGCCCCTGGGTCTCTGCTGAAGACCTTAAGAGCAATGTTACCTAGAGAGGGGTAGGTTTGAGATGTTGCTTGGAATTTGAGCAACCCATGATTTCTTAGGCCGCCCACCATGAGCCCAGGCTGGAGAGGCTCACCTCATCCCACAGCCCACACAGGAAACAAACGGATGGCTCCAGATATGTACTCTTCGGCTCGCGCAGCATTATTTTCAAAATATGAGTTAGTTCCAATATTAAAAATGAGACAGGGCCAGGTGCGGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCAAGGCAGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGCAGAAACCTCATCTCTACTAAAAATACAAAATTAGCCGGGCATGGTGGCACATGCCTGTAATCGCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAATCCGGGAGGCGGAGGTTGCAGTGAGCCAAGATCGCACCACTGCACTCCAGCCTGGGCGACAGTGAGACTCTGTCTCAAAATAAAAAAAAGAGACAGGTTATATAGGAATACAGATATTCCAATTTCTCTACAAAATGTAGCACTGGGCACAGTGGTTCATGCCTATAATCCCAGCCCTTTGGGAGGCCGAGGTGGGAGGATCGCTTGAGTCCATGAGTTTGAGATCCACCTGAGCAACATAGCGAGACCCTATCTCTATAAAAAAAATATATATATATATATTTTTTTATAGACGGAGTCTCACTCTGTCACCCAGGCTGGAATGCAGTGGTGCAATCTCAGCTCACTACAAGCTCCGCCTCCTGGGTTCATGCCATTCTCCTGCCTCAGGCTCCCAAGTAGCTGGGACTACAGGCGCCCGCCACCACACCCGGCTAATTTTTTGTATTTTTAGTGGAGACAGGGTTTCACCATGTTAGCCAGGATGGTCTCAATCTCCTGACCTCCTGATCCGCCTGCCTCGTCCTCCCAAAGTGCTGGGATTACAAGTGTCAGCCACCGCACCCAGCCTATAAAAATATTTTTTTTTTTTTGAGACGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCAATCTCGGCTCACTGCAAACTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACCGGCGCCTGCCACCACGCCCAGCTAATTTTTTTGTATCTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTATTTTGAAAAATATTTTTCAAAATATTTTTCAAATTAGCCAGGTGTAGGCTGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATTACCTGAGGTCTGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCCATCTCTACTAAAAATACAAACATTAGCTGGGATGGTGGTGCATGCCTGTAATCCCAGCTTCGCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGTGGAGGGTGCAGTGAGCCGAGATCGTGCCATTGCTCTCAAGTCTGGGCAATAAGAGTGAAACTCCACCTCAAAAATAAATAAATAAATAAATAAAAATTAGCCAGGTGTAGTGGTGAGTGCCTGTGGTTCCAGCTACTCCAGAAGCTGAGGTGGAAGGATGACTTGAATCCAGGAGTTCAAGACCAGCCTGGGCAACATAGCAAGACACCCCCCCCACCCATCTCTATACAAATTAAAAAATTAGCCAGGTGTAGTGGTGTGTGCCTGTGGTCCCAGCTACTCTGGAAGCTGAGGTGGGAGGATCTCTTGAGCCCAGGAGGTTGAGGCTGCAGTGAGCAGTGATCACACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACCCTGCTCAAACAAAACAAAACAAAAAAAACCTCAGGACATCAGGCTACCGTGGGCCAACATTCCATCTGGCAATAACTGGCAATCAGCTGGGCTGGGTGGCCACTGTCCTCTTTAGATGGGATCTGCTCTGCACTCTACTTCGCAGTCACCACGTTTCTTGATCATCTCCCGACACCCAGCTAGCTTCCCTTGTTTGAAATTTTTGTTTGGTCTCTGTGGGTATTTGAGTTCTCAAAACTTGAGTGTCCATCAGAACTACCTGAGATCCTATTAAAACGCAGATTCTGCCAGGCGCGGAGGCTCAAAAAAATAAAAAAATAAAAAGCAGATTCCTGGGCCTCATCCAATTTGGAATGTCCGGGGTGGAGCCCAGGGGTTGAGTTTGCAACCTCTGCCTTACCTAACAGTGTGTTCCCAGGTCCCTGTGCCCAACAGGTGCTTTTTGGGCCCAGTAATGTCTGCTTCTACTCCTAGGCGTGGGTCTGTCAACATCTCTGTTTCTGTCTCTCTGCAG
Seq C2 exon
GCTGTCTCTCAAGGTGGTCTCTTCTGCTGCTAGCAACTCAAAAATCCCAACAGCACTCCCTATCCTTTCCCTGACCCCAGACCGCTGCCAAGCCTGTTCTCCCCCATTACAACATGGTCTCACTCAGGGCCTGGACTGCTCCAAAACTCGCCCAGGTCTCCAGCTCTCCTCTACCACCCAACACCCTGGGCTCACTTTTGGATAGGAAATAAACTCTTTATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089558:ENST00000264661:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.992 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development