HsaINT0084785 @ hg19
Intron Retention
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:17585]
Coordinates
chr7:128525151-128526611:-
Coord C1 exon
chr7:128526518-128526611
Coord A exon
chr7:128525325-128526517
Coord C2 exon
chr7:128525151-128525324
Length
1193 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
CTGCCCACTTTGCACCACAGGCT
3' ss Score
6.54
Exon sequences
Seq C1 exon
GCTGGCCAGGTCAGCTGTGTGCGGCTGCAGTGCCCACCCCTTCCCTGCAAGCTCCAGGTCACCGAGCGGGGGAGCTGCTGCCCTCGCTGCAGAG
Seq A exon
GTATGGCCGCCTGTAGCCCTACCCCTTGCTTCAGCCCCTTGGCCCTGTGTCCCTCTGTCCACCCCACCTCCCTCCCCTCAGCCAGCTCTTCTCCCACCTCCCTGCCCCAACAACTGGCCCTTGCATACACCCTTGCCACCTTCAGCTTCTCCTACCTCTCCCTGTCCGGGACTGCCCAGACCATCCCTCTTCCAGGTGCTGGTTAGAGTTCCCTCAAAGCTGCCTGTCTTGGGCTGGGTGCAGCGGCTCACATTTGCAATCCCAGCACTTTGGGAGGCCAAGGTGGGAGGATCACTTGAACCCAGGAGTTTGAGGCTGCAGTGAGCTGCATTTGCACCACTGTGCTCCAGCCTGGGCAACAAAGAAGACTCTGTCTAAAAAATAAAACAAAAAGCTGCCCCTCTTCCTAACCACACCCCATTCATCATCATCATCATCATCACCACCATCATCATCATCATCAAGATACCTGACATTCAGTGAGCAGGTAGCATGTGCCAGGCCCTGAGCACTTTACGTGTATTATCTCATTTAATCAGCACAACAACTTACCAGATAAGCACTCTTAGTCCTCCTATTTTACAGACGAGAAAGTGGAGGTACAGAGAGGTAGAGAAGGTGGCAGAGTCAAGATGGACACTTGGACCATCTGGCTCTGAACTTGAGCCTTTCTTAGCCTGCCCACTGCCCCCTCGTCCCACACCCTGCGCAGTGTGGTGGTGTTTCTACAGAACCACAGAACTGTCATAGCATTTCACTTGCTCTGGGAGGGAGGCAGGACAGAGGAAATCCCCATTTAACAGATGAGGAGACTGAGGCCCGGAGAGACTGAGTTACCTTGGGCACATGGTTAGCGATGGAGCCATTCACCTGGTCCACATGCATTTATGACACAGCTGCTGCATGCCAGGTCTGTGGCCGGTGCGGGCTGCACTGGGCAGTGCCTGCTGCCTGGAGCTTGGTCTTGAGAGCAGGTAGGAACAGAACAGGATTAGAACCCAGGTGTTCTGAACCCCTCCCAGTGCCTTTCCCCTCCACAACAGACAGGAGTTCTGCCCCATCGCACCTTCCCGCCATATCCCTGCAAACTCACTCCTGGCGCCACGTGCCTAGCTGACCACTGAGGGTGGGGGCCAGGAGCAGATGTCCAGATCTCAACCTCCGAGCTCGTCCCTGCCCACTTTGCACCACAG
Seq C2 exon
GCTGCCTGGCTCATGGGGAAGAGCACCCCGAAGGCAGTAGATGGGTGCCCCCCGACAGTGCCTGCTCCTCCTGTGTGTGTCACGAGGGCGTCGTCACCTGTGCACGCATCCAGTGCATCAGCTCTTGCGCCCAGCCCCGCCAAGGGCCCCATGACTGCTGTCCTCAATGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253-KCP:NM_001135914:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAGGTCAGCTGTGT
R:
CAGAGCATTGAGGACAGCAGT
Band lengths:
266-1459
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)