HsaINT0084787 @ hg38
Intron Retention
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128884002-128884863:-
Coord C1 exon
chr7:128884781-128884863
Coord A exon
chr7:128884123-128884780
Coord C2 exon
chr7:128884002-128884122
Length
658 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
CTGCTCACTCATTCTTGTAGCCA
3' ss Score
6.26
Exon sequences
Seq C1 exon
ACTGTGAGCATGAGGGCCGGAAGTACGAGCCTGGGGAGAGCTTCCAGCCTGGGGCAGACCCCTGTGAAGTGTGCATCTGCGAG
Seq A exon
GTAGGTGAGGGCACAGTGGTGGGGCTGGGGCACCTCGTCGGGGGGGAGTGGGCAGCATGGGATGAGGCCCAGCCAAGCTGGTCACTGCATGGAGCAGGCACTCTGGGGGCCAAAGGAGTGTATCCCTGTGGCCAGGAGACAAGGCAGGGTTGGGGCCAACAGGGCCAGGAGGTCTGGGTTTAGACAAGGAGCGCAGGTTCCAAGTGTGCAGGAGGCCGTAGGTGGCCCCCCTGGCTGCAGTGCAGGGCGGGTGTGTATGGCCGGAGAGCCACCTGGGACGTGGCTAGGGGTCATATTGTGGAGATTCTATTTGCAAGGCCATGGAAGGGCTTGGAGCAGGCAAATGACATCACAGGTCAGGGTACTAAGCCATGGGCCTGGGGAGGAGGATGGCATGAGCCTGCCGGAGGATCAAAGGTCACATGAGGGCTCAGGCCCAAGTGACTTAAAGGAGAAGGAGACATCATCTCAGAGACTAGGGCATGGGGTGAGGAGCACGTCTAGAAGACACTGAGTCTCTCTTCAGCCTTGAGTTCAGGGCCCAAGACATGTCCCGGAAGAGGCTGCAGCAGGCAGAGGGAGGGGCCGGAAGTCCCGGCCAAGGGCAGCTCTGGGTTTTTGTGGCCCAGGACCCACCGCTGCTCACTCATTCTTGTAG
Seq C2 exon
CCACAGCCTGAGGGGCCTCCCAGCCTTCGCTGTCACCGGCGGCAGTGTCCCAGCCTGGTGGGCTGCCCCCCCAGCCAGCTCCTGCCCCCTGGGCCCCAGCACTGCTGTCCCACCTGTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253:ENST00000620378:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(39.4=92.9)
A:
NA
C2:
PF0009313=VWC=PD(57.6=92.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development