HsaINT0084788 @ hg19
Intron Retention
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:17585]
Coordinates
chr7:128521991-128524176:-
Coord C1 exon
chr7:128524056-128524176
Coord A exon
chr7:128522071-128524055
Coord C2 exon
chr7:128521991-128522070
Length
1985 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
CTGGATTCTTGTCTTCACAGAGG
3' ss Score
7.19
Exon sequences
Seq C1 exon
CCACAGCCTGAGGGGCCTCCCAGCCTTCGCTGTCACCGGCGGCAGTGTCCCAGCCTGGTGGGCTGCCCCCCCAGCCAGCTCCTGCCCCCTGGGCCCCAGCACTGCTGTCCCACCTGTGCCG
Seq A exon
GTGAGTCCAGGGATGTGGGGGTAGATGAGATATGAGGTTAGGGCTGCCACCCCCTGCCGCCCTTCCTCACCAGTCCCAGCCCCAGATTCTTCCTGACTCCAGTGGACTGTTCTGGAACCCTATGCCTGGCCGGCGAGGGCTGCACCATCCCTAAGGGAACTGGGGAAGCTGACAGGAACCCTTTGCCTCTCCGCAGCTGGGTGCAGTTTGTGGAGCATCTTGGCCAGCAGGTGGCGCTGCAGGGCGACAGTTGTGCTGAGACGTGAGGCCCAGGCAGGCAGGGGGTAGCCCAGCCACAGGGGTGGGCGAGCTTTTTTTGTTGTCGTTGTTAGAGTAAAAATTTATTAAGATTGGGGGGAAAAGTAAAGAAACAGTTTTATTTTTATTACAAATATTGAAAGATGGCCAATTTCTGTCTCCTGGATTTAATAGTTGTTTACCTAACACAGCCATTTTACATTTGTTGTGGAGGGAATTTTTTTCTGTTTCTGGTCCTATACCAACACTGAAATGATAACCTACCTTTGCAATACAGGTGAACGTTATCCTTACATAGAAAAAACAGGCCGAGGTTGGTAGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGAGGATCACAAGGTCAAGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGATGGGGCATGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGGATAGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCTGAGATGGTGCCACTACACTGCAACCTGGCAACAGAGCGAGATTCTGTCTCAAAAAAAAAAAAAGAAAGAAAAAACATACTTTTTTTTTTAATGATAATCCTATTTTCTCCAATTTGGTTTTTTTATTTGGGTTTTGGTTTTTTTGAGACGGAGTCTCGCTTTGTCGCACAGGCTGGAGTGCGGTGGCACAATCTCGGCTCACTGCAACCTCTGGATTCGAGGGATTCACCTGCCTCAGCCTCCCGAGTAGCTGGGATTATAGGCATGCGCCATCAAGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTTAACATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCGCCTCAGCCTCCGAAAGAGCTGGATTACAGGTGTGAGCCACCTCGCCGACTTTTCTGTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTATGGTGGTAAGACACTAAAATGTACAATCCTAACCATTTTTAAGTGTACAGTTTGTGGTATTAAATACGTTCATAATGCTGTGCAGTCATCCCTGGCATCCATCAGGGAGGGCTGCTCTGATCAACACTTGCTAGGGGGTGCTTCAGGGGAAGGGAAGAAGACTAACATTGATTAAGCACCTGTTCCATGCCACAGACTGTACTTGGTGCTCTTAATAAAGTCTCTCGCTTCATTTTCATAGTTACCCAGTGAGGGAAGTATTATTAATCTCTTTTTACAGATTAAGAAACTGAGGCTCAGAGAGGTGGATTAATCCAACCTAATAAGCACAGGCACTGAGTGCTGGCATCAGGATTCGAACCCGGGATGCCTGGCTGTGTGCTTCCCTGCGCAGTTGTAGCCACACTGTATTACAGATAGCGGGAGGGAGAGCAGGCCGCAGACTGGCCATTTTTAGTGACCTCAGGCTAAGGAAGCCATGGTTGGTCTGTTTCCAGTCACCTTGCACCCCCACCCGGCCCCAAATAATAGCCTAGCAAAGTTTCTTTTAAAACGTGTAAACTTGACTGAATTGAAGAGAAAGAGGACTTATCCTCCCTGGAGTCAAGGTGCTGGGATATGGGTATGCTCAGGAGTTCGAGTTAGAAACCTGGGGACACAGTGCATGGGGACAGCTGGGATTTCCAGCCCTGTGCCCCTCTTTCTGTCCCGCACTCTGGATTCTTGTCTTCACAG
Seq C2 exon
AGGCCTTGAGTAACTGTTCAGAGGGCCTGCTGGGATCTGAGCTAGCCCCACCAGACCCCTGCTACACGTGCCAGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253-KCP:NM_001135914:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)