HsaINT0084792 @ hg38
Intron Retention
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128879718-128880085:-
Coord C1 exon
chr7:128879913-128880085
Coord A exon
chr7:128879830-128879912
Coord C2 exon
chr7:128879718-128879829
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
TGGGACTTTCCTGCCCACAGTGT
3' ss Score
8.24
Exon sequences
Seq C1 exon
GACAAGGCCCCTGCCCTGAGTCCTGGCAGCTGCTGCCCCCGCTGCCTGCCTCGGCCCGCTTCCTGCATGGCCTTCGGAGACCCCCATTACCGCACCTTCGACGGCCGCCTGCTGCACTTCCAGGGCAGTTGCAGCTATGTGCTGGCCAAGGACTGCCACAGCGGGGACTTCAG
Seq A exon
GTGTGCATCCCCTGTCTCTCTTCTCCCCAACCCCTACACCCAGCCCTGCTGACCATTGGCACCTGGGACTTTCCTGCCCACAG
Seq C2 exon
TGTGCACGTGACCAATGATGACCGGGGCCGGAGCGGTGTGGCCTGGACCCAGGAGGTGGCGGTGCTGCTGGGAGACATGGCCGTGCGGCTGCTGCAGGACGGGGCAGTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253:ENST00000620378:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(24.1=24.1),PF0009420=VWD=PU(24.0=62.1)
A:
NA
C2:
PF0009420=VWD=FE(24.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGTCCTGGCAGCTGCT
R:
GGTCATCATTGGTCACGTGCA
Band lengths:
181-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development