HsaINT0084807 @ hg38
Intron Retention
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128891451-128891819:-
Coord C1 exon
chr7:128891646-128891819
Coord A exon
chr7:128891534-128891645
Coord C2 exon
chr7:128891451-128891533
Length
112 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
ATAGCCCCTCCCTCCCCCAGGCT
3' ss Score
8.79
Exon sequences
Seq C1 exon
ACTGCATCCTGGAGGAAGAGGTGTTTGTGGACGGCGAGAGCTTCTCCCACCCCCGAGACCCCTGCCAGGAGTGCCGATGCCAGGAAGGCCATGCCCACTGCCAGCCTCGCCCCTGCCCCAGGGCCCCCTGTGCCCACCCGCTGCCTGGGACCTGCTGCCCGAACGACTGCAGCG
Seq A exon
GTGAGGTGGGCGGGTCAGGGCGGCCTTCTGGGATGGGATGGCATGGCCCCCGGAAGGCAGCACGCCCTGGGGCAGTCGCCCTCTCCCAGGCTATAGCCCCTCCCTCCCCCAG
Seq C2 exon
GCTGTGCCTTTGGCGGGAAAGAGTACCCCAGCGGAGCGGACTTCCCCCACCCCTCTGACCCCTGCCGTCTGTGTCGCTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253:ENST00000620378:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=WD(100=94.9)
A:
NA
C2:
PF0009313=VWC=PU(45.6=92.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAGGTGTTTGTGGACGG
R:
CAGACAGCGACACAGACGG
Band lengths:
244-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development