HsaINT0084999 @ hg38
Intron Retention
Gene
ENSG00000173120 | KDM2A
Description
lysine demethylase 2A [Source:HGNC Symbol;Acc:HGNC:13606]
Coordinates
chr11:67250086-67252857:+
Coord C1 exon
chr11:67250086-67250346
Coord A exon
chr11:67250347-67252693
Coord C2 exon
chr11:67252694-67252857
Length
2347 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGG
5' ss Score
8.21
3' ss Seq
TCTCTTCCCTTCTATCACAGGTG
3' ss Score
11.15
Exon sequences
Seq C1 exon
AAGCGGAAAATGGAAGAGAGTGACGAAGAAGCTGTGCAAGCCAAAGTCCTGCGGCCCCTGCGGAGCTGCGATGAGCCTCTCACGCCCCCGCCTCATTCACCCACTTCCATGCTGCAGCTCATCCATGACCCGGTTTCCCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGCGATGAGCGCTTCAAACGGCGGCAGTTGCTGCGGCTGCAGGCCACAGAGCGCACCATG
Seq A exon
GTACGGGAAAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACGCTACAGAGGCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCGCCATTCCCCCCGTGTGCTAGTGCAGCACTGCCCAGCCCGAACCCCCCAGCGTGGGGATGAGGAGGGGCTGGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGAGGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAGAGAACTTTGTGAATGTATGCGAGTGTGCAAGACGTGGTATAAATGGTGAGCAGGGATTCAGGGGGTCAGGAATTAGGGGTATGGGAGTAGGTGGCAGGTTTTCCATATGAGAACAGCATGCACCTTGGCATCTGAAAGCCTGTGGGGTCTTATGAGGAGTGAATTGACCCTTTTTCCCAAACTTTGGGTCCTGTTTAAAGATGTAGCCTGTTGTACCCGCAGATGTCATTAGGGAACTGGCCATTTGCCTCCTGGCCCTGCTCTATACTTTCCCATGTCTCATTGTTATGGGGAGGGAGACTGATTTGCGGGATAGATTTGTAGTCTGTGATAAAACTTGAGAGTCTTGCGGGCTGAAAATTTCCTCCTCAAGTCAGCTGAACTCATCACATGTTGGTTGAGAGCCTATGATGTTCTAGTCACTCTTCTGGTGCTGATAACACAGATAACCTCACTTAAGCCCCTGACTCAATTACCTCTCCATTCAGTGAGAGAAGTGGGCATGCTTTTCAAGATGAATTTGAAGGTGCTTAACATTTTTCTTCAGTTTTAATGCTCATCCCCCCAAACCTGGATCAGAATTCCCTCTTCCAGCAAGCAGAGTCCAGTTTTGAAGCTTCCTTAATGAGAGCTACCATTTCTTCTTAAGTTGGACAGACACTTGGGGGAAAAAATTGCTAGTGATGATGAACAAGGAGCTTCCCATTGGGCATTGTTGGTTTTTCCTTAAACTCTGGTATATATTTACTCTAGGATATATCCTTTTTATCTGGGTCACACACATCCTATTACAGTAGTGTGGTGTCCTGACCAATGGCATTCACTCAGGAACTTTTTAGAAATGTCAACTGTCAGGACCCTCATAGGCCTCTTAAATCAGAACCTCTTGGGTGGGCCCAGCAGTCTGCTTTAACAAGCGCTCCTCCAGGGGACTCTGATGCATGCTCGAGTTTAGAGCAGCAAAATCTGCTGTATTGTCAGCAGCTTGCTTCTGCCATAGAAGCTTCATGTGCCACTGGTAAAATTGTTTCAGTCTCTAAATAGACCCTATTCTTTGCAAACATGAGTTTATTTCCCAAATCTGAATTAATGTATAGTGTATCTAAATTCTCCTTAATATTTCTCTGTCTAGGGCTAATAGGACTGCTTGGCTCTACCTCTTGGTTTTCAGGGCAAGGCACATCAGATTCCCGTTATGTGCTGTCTCTCTTCCCCTGCCAACCAGGCTGGGGGGCAGGGGCTATAAAATATTAAATTGAAGCCAGCATGTTGTGGTTTGTGGCCTGTAGATTTGTAGACTGCAGTGGAAAGCCAGGCCTATCCCTTTCAGTTCTGGTCTGGCCTGGCTAGAAAATGTCAGGATAGCACTGAGGCAGAACTTGAGGGTGAGAGAGGACTCTGTAAGCCTGATAAAGAGCCTCTTTTGACCTGATACAGTAATGGGCTGAAGGCAGGGTGAATTGTGGATGTGCTGAGTAGCACCCTGCATTTCAGGCAGCTGCGAGTGATTGACAAGGGAGGGAACGGAGCAGGCCTTCTTAGCTTTAGACAGTAAGAAGTCTAGAAACTTCAAGAGGCTCCCTTATATACACTTCAGCAGGAACCATGCCATTTTAATACAGATGAAGGGGCTATAGACTGTTGCTTGCTATGGGTCCCTAACAACTGTTGTGTTCTCAAACACTCCAGAATAAATCAGGGTAAAGTGGTCAAGTTATATACTATCAACATGTAGGTTTGCAAAGCGTCTAGTTGTTGTAGAGTTCAAGGCAATTTTTTGCCTATTCTGTGAGGCAAAAAATGATAAGGTGTGATCCCTGTACACTTGTAGAAGAACGAGCCTCCAGGTACTCTGCTTTTCCCAGAAGCCATAAGCAGCCTGTGATGGGAGCTCCACTGATCAAGTTAATGAAGGCGAGTTCTCTTCCCTTCTATCACAG
Seq C2 exon
GTGCTGCGACAAGAGACTTTGGACAAAAATTGACTTGAGTAGGTGTAAGGCCATTGTGCCCCAGGCCCTCAGTGGCATCATCAAGAGGCAGCCAGTCAGCCTTGACCTCAGTTGGACCAACATCTCTAAAAAGCAACTGACATGGCTCGTCAATAGGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173120:ENST00000398645:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.710 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF0064628=F-box=PU(72.3=14.3)
A:
NA
C2:
PF0064628=F-box=PD(25.5=21.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development