HsaINT0087327 @ hg19
Intron Retention
Gene
ENSG00000213213 | KIAA1984
Description
KIAA1984 [Source:HGNC Symbol;Acc:28236]
Coordinates
chr9:139694165-139694621:+
Coord C1 exon
chr9:139694165-139694242
Coord A exon
chr9:139694243-139694453
Coord C2 exon
chr9:139694454-139694621
Length
211 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACC
5' ss Score
8.55
3' ss Seq
CGGTGCCCTTCCCGACCCAGGTG
3' ss Score
9.04
Exon sequences
Seq C1 exon
TATGACCAGTGGACCATCTCCAAGGCCTGCGGGAAAAACTTGCCTTTGCGACTGGCGCACTGCCGCAGCACCATGGAG
Seq A exon
GTAACCAGGCAGGAGGGGCCTCGAGACCCAACCCTCCCCACCCCTGCCAGCACCCCCCCACTAGATGTTGCGGAGCCGACGAGGGACGGAGCAGGTGCCCAGCCCCAGGTTCCCTGTGGGGTTGCCACGAGCCTCCACCCGCCCGCCTGCTGGCGGGCTCCATGGCGGCCCCCTACGCAACCACGAGTGGGCGGTGCCCTTCCCGACCCAG
Seq C2 exon
GTGGTGCGGGAGAAGCTGCGCAAGTACGTCTTCGACCGCGTGAACATGCACAACCTACTGATCCACCTGGTGCGGCGGCGCGGGCAGAAGCTGGAGAGCATGCAGCTGGAGCTGGACAGCCTGCGGAGCCAGCCCGACGCCAGCAAGGAGGAGCTGCGGCTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213213-KIAA1984:NM_001039374:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGACCAGTGGACCATCTCC
R:
CCGCAGCTCCTCCTTGCT
Band lengths:
237-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)