HsaINT0090216 @ hg38
Intron Retention
Gene
ENSG00000053747 | LAMA3
Description
laminin subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr18:23810366-23813103:+
Coord C1 exon
chr18:23810366-23810503
Coord A exon
chr18:23810504-23813056
Coord C2 exon
chr18:23813057-23813103
Length
2553 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
AATTTCTGAATCATATTCAGGTT
3' ss Score
6.4
Exon sequences
Seq C1 exon
CCTGCTGGTGTTCAGCCCTTGGATCCTACCAGATGCCCTGCAGCTCAGTGACTGGACAGTGTGAATGTCGGCCAGGAGTTACAGGACAGCGGTGTGACAGGTGTCTCTCAGGAGCTTATGATTTCCCCCACTGCCAAG
Seq A exon
GTAGGAAAGTCAGCAGATTGCTAGAGGGCTGGTTCCTCTCTGAAGTGTGTGCAGCCAGCCTCCCAGAGAAGCCTGCAAATCCCCCACAGACTCACCACTGGCCACCCCCACATCCTGCTTTCACAGATCTAGTCTGCTTGGTTCCTCACCTGTTCAAGTCTGGTTTGAAAACACGTATATCATATATGTACCCTCAAAGGAATCCAGAAATGATTTTTTTAACTAAAAATAATGTAAATTTCCATGTGCTATACATGTGGGTTTCTTGGTTCACATGTCAGTTTTCTGTGGATAGCATTGTGGCATAGGTGACTCCTTTGAGTTAAAGGGGCCATTTGTTGTCTTCTGTCCCGAGGCATCATGCCTTCTTTCGCTCCCAGCTTGTGGTGCTAATGCTGGCAGCACTGTAATGTTTCTAACAGATCCACTTGCCAGCAGGCTTAGCAGGACCTTTGCTGTGTTTCGGGCCTCTCTCCCTGCCCTCCTCTGGCCTTCTGGGGGACCGTGTCATCGTACTTCAGCCCAAGTGTTGGGGAAGGCGGGTGGGATGCACTGGAGTCTATGCAGTTTGGAGAGAGTGCACTGAGGGGGAGATGAAAACCAAGCCTGCAGCTGTGGGACGTGGTTGGTATTCATCCCTCTGTTGATATGAGAGATTAAGGCTTGCCCATGTACCATGGCAGAGGGGACAGAAATGAGATGTCCACAAATTTCCCTGGGCTCCCTGGTGTGTGCAGCCAGAGAGCAGACCAGTAGCTCTTGTCAATTTCGGAGAACTCTTGCTACTGTGAAGAGGTGTTTGTGGAAGGCTGACCCAGACTATCCATCAGGAGAATGTGGTTTCTCAGACCCCTTCCTGCGCTTTGAAGACAGGACTGACTTCATTTCCCAGAATCTTCCTAACCAGAATCCTCTGGAGACCAGGTTTCCTTGAGGGTGGAAGTTGCAGCAGGCAGTCAGAGGTGGGTGCTTGCCTTTCAAAAGGCCTGAAGGTCCCTAGGATGCGAGGGCATCCTGCATGGGTCTGCTCACCTCCATGGGCCTCAGGAGCAGAAGGAAGTGCTGTGGCTGCCTGGCAGAGAAGCTGAGCAGCCACAGTCATCCCAGGGCTAGATGGCAATGTTTGTGTCCTGGAGAGGAACCCGAGGTTGGGCATGGAAAACAAACAGCTGGAAATTTGTGTTGGGTATTACGGAAAAATGCAGGGAACAGGAGAACATCAGAAAAGAAAGAGAGGGCAGGGTGGCTCATGCTTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGAGGATTGCTTGAGGCCAGGAGTTGGAGACCAGCCTGGGCAACATAATGAGATCCTGTCTCTAGAATTTTTATTTATTTTTGATTTTATTTTATTTTTTTTTGAGACAGAGTCTCGCTCTGTCCCCCAGGCTGGAGTGCAGCGGCATGATCTCAGCTCACTGCGAGCTCTGCCTCACGGGTTCAAGCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGATTACAGGCATGTGCCACCATGCCTAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTCAGCCAGGATGATCTTGATCTCCTGACCTCGTGATTTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACTCCCAGCCTCTAGAAAATATTTTTTAAAATAACCGGGCATGGTGGTGCATGCCTGTCATTCCAGCTCCTCAGAAGGATGAGGTGAGAGGATCACTTGAGCCCAGGCATTGGAGGTTGCAGTGAGCTATGATCGTGCCACTGCACTCCAACCTGGAAGACAGAGCAAGACCCTGTCTCAAAAAAGAGAGTGAGAGAGAGAATGAAAATCATCAAGGGGAAGCTGAGGCAGACAGAAGCAAACAAAGCCAATAGGGTTAAGGAACAATTTATAAGCAAACAAGATCCTATTATGGATTTATTTAAATGATTTGAAAAACCAGACTCAGAACAGACTTACCCAGTTCAAACACTGTGTAATTGTAATACTGAAACATTGCAAGATCCCAATTTATTGAAGAGAGATTATATTTGGTTTGTAGTGTTATACTAAGTCAGGAAAACAAACCAATTGATTTTATAAATAACTTTAGTACGGGTGGGAACAAGGAGGTGTGATAATTAAAGATGTACTTAGAAATTCTAGAACGTCTTTTAAATGGGCAATTAAAAGTCTCTTGGTACAATATTGCCCTCTTCTGGACAATACTAATGATGCTCAAAATTTTAGAATCTTTCCCTAATCTCCTCCTTCATCATCAATTAGAAGTGAACTGTCATGAGTAGACAGGATAGGGATTTGTTCAGTGGCAAAAGAGGTAATTTGGGGATTAAGGACCATAAATGTCATTCAAGATGCCTGACTATGAATTGCATGCAGACTTTGCCACACATCTATCGAAAATATAAATGTAGATACACTATTTTTGAAAACAAAACGTTTAAAACTTGAAACATCAAAACAAAGAGAAAAACAAACTACCAGATAATTTAAAAATTTCTGAATCATATTCAG
Seq C2 exon
GTTCCAGCAGTGCTTGTGACCCAGCTGGTACCATCAACTCCAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000053747:ENST00000313654:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(0.1=0.0),PF0005319=Laminin_EGF=PU(88.2=95.7)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(9.8=31.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development