HsaINT0090389 @ hg38
Intron Retention
Gene
ENSG00000091136 | LAMB1
Description
laminin subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:6486]
Coordinates
chr7:107929064-107929619:-
Coord C1 exon
chr7:107929412-107929619
Coord A exon
chr7:107929206-107929411
Coord C2 exon
chr7:107929064-107929205
Length
206 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
TCTCATTATTTTTTACTCAGCAA
3' ss Score
4.56
Exon sequences
Seq C1 exon
AGGATAGTGCTGATTTGGACAGCATTGAAGCAGTTGCTAATGAAGTATTGAAAATGGAGATGCCTAGCACCCCACAGCAGTTACAGAACTTGACAGAAGATATACGTGAACGAGTTGAAAGCCTTTCTCAAGTAGAGGTTATTCTTCAGCATAGTGCTGCTGACATTGCCAGAGCTGAGATGTTGTTAGAAGAAGCTAAAAGAGCAAG
Seq A exon
GTATCTAAAGACATGGCATCTAAGGGGCTTATTTTGTGTATCTATCATGGAGTAAAAAGTATCTCTTTAACCAATGAAACTTCTAAGAAGGACCTATGCGAGTCTCTCTGGGTCATTTCAGGAAGGCTATTCTTTAAAGAAAAGAACACTGAGAGTACTTTTTTCATGTTCAGCAACAATATACTGTCTCATTATTTTTTACTCAG
Seq C2 exon
CAAAAGTGCAACAGATGTTAAAGTCACTGCAGATATGGTAAAGGAAGCTCTGGAAGAAGCAGAAAAGGCCCAGGTCGCAGCAGAGAAGGCAATTAAACAAGCAGATGAAGACATTCAAGGAACCCAGAACCTGTTAACTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091136:ENST00000222399:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGGAGATGCCTAGCACCC
R:
AACAGGTTCTGGGTTCCTTGA
Band lengths:
292-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development