HsaINT0090398 @ hg38
Intron Retention
Gene
ENSG00000091136 | LAMB1
Description
laminin subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:6486]
Coordinates
chr7:107975689-107978167:-
Coord C1 exon
chr7:107978047-107978167
Coord A exon
chr7:107975878-107978046
Coord C2 exon
chr7:107975689-107975877
Length
2169 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ACGTTGCTCTTGTCACGCAGAAT
3' ss Score
7.6
Exon sequences
Seq C1 exon
GTTCACGGACACTGCATGTGCAGGCATAACACCAAGGGCTTAAACTGTGAACTCTGCATGGATTTCTACCATGATTTACCTTGGAGACCTGCTGAAGGCCGAAACAGCAACGCCTGTAAAA
Seq A exon
GTAAGTCTGTGTTGAAGGGACATTTTAAATCCATTCAGGCTCTAGTATCCATTTCCTAATTAGAGGTACTGTAACAGTGTACTGTTTTGCAGAGGGTAGAAAAGTTACTGTCTTTTTTCCAGCTTCACCCTGATACTCCTAGACAACCAACAATCTGCATTCAGTTAATTAATATTCACTGAACAGCCTCTGTGTGTTTGACACTGAGCTGAGTAGTTTGGCAGCTACAGTAGAAAACTAAGGTGCTGTCCTTGACATTGTATCTGTTTTGTTTTTTGGTTTTTTTTTGTCGCCTAGGCTGTAGTGCAGTGGCACAGGCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGGAGTAGCTGAGATTACAGGCACGCGCCACCATGCCCTGCTAATTTTTTTTGTAATTTTAGTAGAGGAGAGGTTTCATCGTGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCTACCCACCTTGGCCTCCCAAAGTGCTGGGAGTTTACAGATGTGAGCCACCGCGCCAGGGCTGTTTTTAAGGCAAGATGACCGTGAGAGAAAAATGAAAGAACTATATGGCAGGGTAGCTGATGAAGGTCTAAGAGATATGGAGTAGCATTTTTGGCCTTGTTTCTGTGCCAGTCCAGCTGCGGCCTCTGGCATACCTCCCTCCATCCATCTCAGGGGTTTTCTCCGGGTGGAGATGTAGCCGGCAACACCACTGCCCCTCCCCACTCCACAAACAGTGATTCTGATGCATGTCCTCCCCTTGAAGAGCAGCTCCGCCTCTGCCCCCACTGAGAAGGACTATTATAGAAGTTCAGCAGCCAGTGAGAGCTGGAGTGGTCAAGGCTTGCTTTGTAGGTAAAAACCAGATGGCCCTTGATGGATACTTAACATGGAGAAGGAAGGGAGGGAGGGAGGAAGGGAAGGGGAGGAAAGGAAGGAAGGAGAGAGAGGAAAGGAAGGAAGGAGGGAGAGGAAAGGAAGGAAGGAGGGAGAGGAAAGGAAGGAAGGAGAGAGAGGAAAGGAAGGAAGGAGGAAGAGGAAAGGAAGGAAGGAGGGAGAGGAAAGGAAGGAAGGAGGGAGAGGAAAGGAAGGAAGGAGAGAGAGGAAAGGAAGGAAGGAGCAAGAGGAAAGGAAGGAAGGAGCAAGAGGAAAGGAAGGAAGGAAGGAGAGGAAAGGAAGGAAGGAGAGAGAGGAAAGAAAAGGAAAAGAGAGGAAGGAAGATGGGAGGGAGTTCAGGTAAGAACAACAATGTGAAGCACAAGGCCGCAAGGATGTTCTTGAAACCATCACAGAGTCCATGCTGGGAAGGATTACTCCAAGGTTCACTTCAACCAGTGTATTGAGAGCAGTACTCTGTTGGGCACCAAGGATGTGAGTAGATAAGACACAGTCCCTCTTCTGCAGGCTGTTGTGTTGCAGGGGGAGACAGGCAAGGTGGGAGGCTGGAGTGCAGAGGCTCAGGAGGGCCAGGCTGAGTCAAGCTTCCCTGTGCAAAGACAAGAATGGGATTGTTAAGCCCGAGAGCGAGATGATTAAAGCTGGGTGGCACCAAGATGACCGCCGAATGGGCTCGCAGAAGGAAGCGCTGCACCCAAGGGGGTCAGCTAGCTGGCTGTTAAACAGACCTACCTTCCTTACTATGGCCTGGCCTGGTGTGGTGGTGGGAATATGGGAATACGGAGAAGGGAATCCATCCTTCAGGCCTCACGGTCCTTGAAGCAGGGAGCCCGTGGACAGGCTTTCCTAGCAGCACATCATCTGGAAGGTCCCTCGCTACAGTGTTCTTCCATCCAGTCCCACCTCGAGTGGACCAGAAAGCGCCCTCAGTGGGATGGCAGCCATCCTCTGTCATACACTTCCAAAGGGACTTTCCCTTAGAGTTTTCCATTTTTCATAGCCCATTCTCTTCCACAGAGGTCAGATAACTGTTTATTTTATAAAGTTCACATTTTTGAGATTTCTCATCTACTTTAGGGTTTAAACAGTGTCATCGGTGGATGCGTCCTTTTTCCCCAGGAGTCCTGCTTGTTGACTGCCATTTTGTCTGAACTTAGTCCCTGGTTTCCTAAAGGATCTTCCTGCCACCCCCATCCTCCATTGGTCCATAGATTTAAAAAGCTTTTCTTGACGTTGCTCTTGTCACGCAG
Seq C2 exon
AATGTAACTGCAATGAACATTCCATCTCTTGTCACTTTGACATGGCTGTTTACCTGGCCACGGGGAACGTCAGCGGAGGCGTGTGTGATGACTGTCAGCACAACACCATGGGGCGCAACTGTGAGCAGTGCAAGCCGTTTTACTACCAGCACCCAGAGAGGGACATCCGAGATCCTAATTTCTGTGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091136:ENST00000222399:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(61.3=92.7)
A:
NA
C2:
PF0005319=Laminin_EGF=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development