HsaINT0090835 @ hg38
Intron Retention
Gene
ENSG00000090661 | CERS4
Description
ceramide synthase 4 [Source:HGNC Symbol;Acc:HGNC:23747]
Coordinates
chr19:8261688-8262421:+
Coord C1 exon
chr19:8261688-8261844
Coord A exon
chr19:8261845-8261929
Coord C2 exon
chr19:8261930-8262421
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TCCCTCTCTCTGTTCCCCAGATG
3' ss Score
11.54
Exon sequences
Seq C1 exon
GATCCTCTACACCACATACTACGAGTCCATCAGCAACAGGGGCCCCTTCTTCGGCTACTACTTCTTCAACGGGCTTCTGATGTTGCTGCAGCTGCTGCACGTGTTCTGGTCTTGCCTCATTCTGCGCATGCTCTATAGCTTCATGAAGAAGGGCCAG
Seq A exon
GTATGGCTGGACCTCCCCGGGGGCCCCAGCCCTAAGCTCCTCCTTCCTCCCTGCTCTGAGCTCCATCCCTCTCTCTGTTCCCCAG
Seq C2 exon
ATGGAGAAGGACATTCGTAGTGATGTAGAAGAATCAGACTCCAGTGAGGAGGCGGCGGCGGCCCAGGAACCTCTGCAGCTAAAGAACGGGGCAGCTGGAGGGCCCAGGCCAGCCCCCACTGATGGCCCTCGGAGCCGGGTGGCCGGGCGTCTGACCAACAGGCACACAACAGCCACATAGCCGGGCGGGGCTGGCTGTAAGGGGTTGCCCCCCCGCCAGTGCCTTGGATATTTCTGGGGTGACTGGACTGGCGCCCCTGGGCCACCTTTCTGGAGACAGGGAGGGCCCCACCCGGGGTGGGTGGGAAGGCTGATGATCTGTCTCCAGCCCCTTCCTTCTGCCCACCCACCCTTCTTCCCTCTGGGCAACTGGACAGATCTGGGAGCCAGCAGCTGGATGCTGTGGCTGGCCAGAGACACCTCCAGGCTGTGGCCTGGGGGCTGGGGGGAGCCCCAGGCTGAAAAGGGTCCAATTAAAACAAATGGAGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090661:ENST00000251363:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.729
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
A:
NA
C2:
PF0379811=TRAM_LAG1_CLN8=PD(10.0=21.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACGGGCTTCTGATGTTGC
R:
CCCGTTCTTTAGCTGCAGAGG
Band lengths:
182-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development