HsaINT0091013 @ hg38
Intron Retention
Gene
ENSG00000184925 | LCN12
Description
lipocalin 12 [Source:HGNC Symbol;Acc:HGNC:28733]
Coordinates
chr9:136952403-136953028:+
Coord C1 exon
chr9:136952403-136952441
Coord A exon
chr9:136952442-136952891
Coord C2 exon
chr9:136952892-136953028
Length
450 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
GCCCACCACCGCCTCTGTAGTTC
3' ss Score
3.7
Exon sequences
Seq C1 exon
CCACTCCCGCCCCCGATGCAGAGCTTCCAAGGAAACCAG
Seq A exon
GTACAGGGGTTTTGACGGAAGGAGAAGCAGCCGGCTGGGTCTGAGTGCAGGGAGAGGCTGGTGGCTGAGCAGGCCTGGGGATGCTGCCCAGAGAGCCAGGACCAGCCGTGCTTCCAGGAGCCCCCAGGCGGGCCCCTGACCTCCAGCAGAGGAGGGCCCAGCGCAGACCTTCCTGGCACCCATTCCCTGCCGTCAGCCCAGCCCATCGCTCCCTCTGTGCGTGAGGGGAAACAGGCTCGGGAAGGCCGCACAGCCACTGGCCAGGGTCACCATGTCCCTGCCAGACCCAGAGTAGGCTCTGGTTCTTGCCAGTGTCCCTGGCGCCGGCCCAGCCAGGAGCACTGCTCTGTGAGGGGTCCAGAAGCTGCCAGGGAGGGCGGGAGGGGGCTCCTGACCCTGCCCACTGCCACCCCTGCCCACCGCCGCCCCTGCCCACCACCGCCTCTGTAG
Seq C2 exon
TTCCAGGGGGAATGGTTCGTCCTGGGCCTGGCGGGCAACAGCTTCAGGCCGGAGCACAGGGCGCTGCTGAACGCTTTCACCGCAACTTTTGAGCTAAGTGATGATGGCCGCTTTGAGGTGTGGAATGCGATGACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184925:ENST00000491316:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006118=Lipocalin=PU(30.3=95.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development