HsaINT0091023 @ hg38
Intron Retention
Gene
ENSG00000177984 | LCN15
Description
lipocalin 15 [Source:HGNC Symbol;Acc:HGNC:33777]
Coordinates
chr9:136759636-136761853:-
Coord C1 exon
chr9:136761787-136761853
Coord A exon
chr9:136759784-136761786
Coord C2 exon
chr9:136759636-136759783
Length
2003 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GGCATGCGTTTTCTACGCAGGTG
3' ss Score
8.16
Exon sequences
Seq C1 exon
ATGCATGCAACCCTGAGAGCAAGGAGGCGCCCTGACACCTCCGGAGCCCCACCCCCGCCCTTCCCAG
Seq A exon
GTGGGTTCTCCAGGCCCTGCAGGGGATGCCCTGGTTGCCTCTCCCCTCCCTATCGCAGCTTGACATCTGGTTCTGTCTGCCCCATGCCTGCCCCGCTGTTCTGCCTGGCGACCCCATGCTTCAGGCCTCAGCTTAGACATTACCTCTTCCAGGAAGCCTCCCTTGATTTCCTAAGGTACCCATCACAGAGTACCACAAATGGGGCGACTTAAAACAGCAGAAGTTTGGCCGGGTGCAGTGGCTCATGCCTATCATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGGTCACCTGAGGTTGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAACTTAGCTGGGCGTGGTGGTGCACACCTGTAATCTCAGCTACTTGTGAGGCTGAGGCAGGAGAATCGCCTGAACCCAGGAGGCGGAGGTTGCGGTGAGCCGAGATTGCACCATTACAGTCCAGCCTGGGTGACAAGAGAGAAACTCCATCTCAAAACAAACAGACAAAACCAGCAGACGTTTATCTCTCCCAGTTCTGGAGGCCAGAAGTCCAAAATCAAGATGTCCACAGGGCTGGTTCCTCTGGAAGCTCTGAAGGAGACTCCCTCCCACACCGCCCCCCCAGCTCCCACGGCTGCCGCTTGTCCTGGGCATTTCTTGGCCTGTGGAAGCATCAGCCCTGTCTCCGCCTCCGTCCTCCCACAGCCACCTTCCTTCTGTGCATCTGTGTCCAAACTGCCCCCTAGTGTCTGTGCTGCCGAAGCGAGTGCCCCACGGCCCTCTTCTTAGGAGGATGCCTGTGCTTGGATTCAGGGCCCACTGTAAATGCAGGATGATCTAATCTCCAGATTCTAAACTAGTGGTATCTGCAAAGACCGTTTCCAAATAAGGCCACGTTCGGAGGTTCCAGGTGGGCCTGAAGTTTTGGGGACACGATTCAATCCACAGCTCTGTGTCCCCGCTGTATCCACACAGCCCCTGGCTCCCTCCCCAGGGCAGGGTCCTGCCTTGTAATTGTGGGAGCCTTGTCTTCTCCCCCAGGGCCCAGGAGGGCAGACCACAGCCTTCGCGCGCAGTGCCCCTCACAGGAGCCACGTGCGGGCGGGGTCTTGCGGAGATCCCCCCCTAAACCAGACGCCGGGAGACCGCTGGGTCCCTCGCCGGGGCTCACCGCCAAGAATCTGGGCACAGCCACACGTCACGTGTCTGACGTGACAGTCACCGGCGTCTGGAGGGACACTGGCCCTTCCTGGCATGGCGGGAGGAGGTGGGCGGCTCTGAGGCGGGGCTGTTTCTCCTGCGTTTCTGCCGTGCTGCTGTTGCGTTTCCTGCATCTCTGCTCCTCTCCATGAGCTTCGCCTCCACTCCCAGGACCCTCTCCCTGGAGACTCGCCGTCCTGCCTGGGGACACTGGGGCTGTTCAGCTTTGCACAAGTCTGCACCAACGTCTCCCTGCACACCCCCGCTGGGTTGGGAAACATGGGGGGCAACACCAAATCGCCCTTGTCCAGAAGGTTCTGTGGGCAGAACATGTAGCCCCATCCCGCCATGATCTTGAAGAAGCAGCTTTCGGGGTAGAGTGCCCCGCCTGGGCCACCACGCGTGACCGTGGAGGCTGTGGGTTCTGTGGTGGCTTCATGGACATTCCGGGGCTTTTCTTGCCATGCAGCCCCCTTCACCGAGGACCAGGCAGAGGCCATGGCTCACTGCCACTCAGCCAGGGACTGGGGCATGGCACTGGGTCCTCCCGCGCCGGGGAAGGTGGGGAAGTGCTGGAGCCAGGGATGGCCTCTGGGGCAGCCTCTCGCCTGGGGCAGCAGTGGTAGCTGGTGTGTGTTTCCAGGTTTGCAGGAGTTTTGGGAGCAGAATGAGCTCTCCCTGGCCTGTCAGTGGTGGCTTTGGAAGAGTGATGCCCAGCTTGTGGGGAGCAGGAAGGGCGTTTGTCGCGGGAGTGGGTGATGGAGTAGGCATGCGTTTTCTACGCAG
Seq C2 exon
GTGGAGCCAAAGCAGCAGGCGCCTTTGCCCCTGGAGTCAAGACCCACAGCCCTCGGGGACCACCTGGAGTCTCTCCATCCTCCACCCCCCGCCTGTGGGATGCCTTGTGGGACGTCTCTTTCTATTCAATAAACAGATGCTGCAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177984:ENST00000482511:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=PD(0.1=0.0)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development