HsaINT0093030 @ hg38
Intron Retention
Gene
ENSG00000237037 | NDUFA6-AS1
Description
NDUFA6 antisense RNA 1 (head to head) [Source:HGNC Symbol;Acc:HGNC:45273]
Coordinates
chr22:42091297-42092232:+
Coord C1 exon
chr22:42091297-42091600
Coord A exon
chr22:42091601-42092118
Coord C2 exon
chr22:42092119-42092232
Length
518 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTTTTTTTTTTTTGAGACAGAGT
3' ss Score
3.01
Exon sequences
Seq C1 exon
CGCAGGAGAGGTGTCAAAGAGCTGGCGCGTCTCCAGAGCCCCGGGAGGAAGGCTGTAACGGCAGCCCCATCGTAGACAGGGACATTCGCATCCCGAGCCCTGGATCTCTGAAAACCAGCCCAGAATTTGGAAGCTGGAAGGAACTTTAGATCGTCCATTCTGAGTGTCTCTCTTCGCTGGCGTTTTCCCACTGAGGTTATGTAAACATGAAGAGGAGCCTACAAGTGTCAAGGAAAAAACGACAGCTAACCACAGGGCAGGCCATGGGCAAGATATCTCAGTGTTCTCCGCTCTCATAGGTCAG
Seq A exon
GTAGGTACCTCAGCATCCCCATTTTACAGGTGAGGAAACTGAGATGGCCCAGAGTCTAGGTCACCTGACAGATCGCCCCCACCTGCCTGACTGCTGCCTAAGAGGCTCCGTCTTTTTCTGAAGGTGTAGTTGACAGGAGCCTGTGAGTATTGGGGAAGGGCCAGGGGCCGGGGCTGAGCATCTACTCCAAACTTTCCCATTTCGAAGGGTTAAAAAACCAGATATACTTTTTTTCTTCCTTATTATCTTCTAAAATGTATATATATATTCAAGTGAGCTATACAAAAGAAAGCACGTAACATATATAAATTATAAAGCATAATAATAAAATGGAAGCTTTTGAACCTCAGTACTGACTTAAGAAGTTGTAACACAGTTAAGGTTTGTATAAAGTGTCCTTAGATGTCCTTAGTAGCCACTGTTCTCTAGTTCTCTAGGTACATTAACTTGGCTAGGCTTCACAACACACCAGTGAGATTGTGTTGATATACCCTTTTTTTTTTTTTTTTTTGAGACAG
Seq C2 exon
AGTGAGACTCACCTAGGCTGGACTGCAATGGTGCAATCTCGGCTCACTGCAACCTCCGCCTCTCATGTTCAAGCCATTCTCCTGCCTCAGCTTTCCGAATCGCTGGGATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237037:ENST00000439129:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGTGTCAAAGAGCTGGC
R:
TGAGCCGAGATTGCACCATTG
Band lengths:
345-863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains