HsaINT0093512 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:148987029-148989399:+
Coord C1 exon
chr7:148987029-148987129
Coord A exon
chr7:148987130-148989301
Coord C2 exon
chr7:148989302-148989399
Length
2172 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCTCTCGAAACGGTTTCCAGGGC
3' ss Score
4.87
Exon sequences
Seq C1 exon
GCCAGGCCACCACCAAGCCAGATCTGGCACCAGTGGAGAAAGGAGACAGGCAGGCAACTGCAGCCTGCCCAGTGCGGAGAGGGGCCAGAGCCCGGGCACTG
Seq A exon
GTGAGTCCCTCAGGGTGTGGGCCTGGGCCTCTCCACCTGCATCTGGTAAGGGCATCTGGTGTCAGAAGGCCCCCTTGGAGAAAGAGAGGCAGAGGTGGGGGGAAGTGAACTGCTGGGCCTCACAGCTGGTGGTCAGGGCCAGACCCGGGTGTTCTGACACCCAGAGAGGGCCTGGGCCATTTCCCATACTCCATGTCCCTTTGGAGCCATCGCTTGGCCTGAGACCAGTCTGGAGGCTTGAGGGGAAGGGCAGAGGGCATAGCAGATACCAGGAACCTGAGACAGGCCGTCTTGGTGCATGCAGGGTTCCGGGAGGAGCGACGGGCTGGCGGCCTCCGTGAGACCTGCCCTGACACTGCATCTGCTCCCAGGGCCCTTGGTGCCTGCGTGCATGTCCTCCTCACTTTGCAGCCTAATCCCTGCTTCCTCTCCAGGCTTCACTCTCCTTGGGTGAAGGGACTGAGTCTTGCTGTGTTATCCCCCTCCTCTAGCACCTTACACAGTGCCTGGCATGTACTGAGATTATAAATAATATATAATTACTAAATGAACAGTGAACCAGAATAGAAGCTCAGTTTCCTCCATTTTTCAAATAATAGCATTGGATCAGAATGCAGTTTTTTTTTTTTTTTAAAGGTGAGAACCCTTTATTCCAGTGACAACCAGAAACATATAACATGGGGACAATGGGACCATTCTAGTTGAAGGACAGGAACCCTGGAGCTGGTTGCTCAGAACACAGTGGATCATGCCAAGATACTGCTGCTTGCTTTCTAGATTCTTAGATTTGGGGAGGAAGGCTCCCCTGTGAAGCAGACTCTTTGAGTAGGTAAATTAAGTCACAGTGAGCCCAGAGTGGGGAAGAAGGTGGGGGTTGACAGGGGTACTGAGTGGCTGGCATGTAGGTCCAAGGCTAAAAGTGGCATTTCCAGGCACCTGCAGGGGGCAGGGGCACCAGAGAGAGAGCAGGGTTGAGTAAGGGGTGGGGTGTGGCAGGATGCAGGTCACATAGCCCAAGCTGGGGAGCCCTGAGCGAGAGGCCAGCTGGGCAGAGCGTGGCTCTTGTGGTGTCACTGAGCGTGGCTCTTGTGGTGTCACTGAACGTGGCTCTTGTGGTGTCACTGAGCGCTATTACAGCAGCAGCCTGGCCAACAGCTCCTCCCCTGTGGTGCAGGGAGGGGAGCTGAGCCCAGGCACTGCAGCCACCCCCGTCTTGGGCTGGCCCCCTGCAGCAGGTGTGGGCAGGACTGGGGCATGTTCAGAGGCTGTGGCCGGTGCCACAGTCCCCAGGGCTGAGCAGCTCCTAGGGGGATGCAAAGCAGCAGGCAGGGCCTGGCCAAAGAGCTGCAGGCACGGCTCTGCCATGAGGCTGGGCTTGCACCTGAAGGCAGCTCAAGGAAGCGTGGTGGGTGGAGGAATGAGACCTGCTCAGGGGATTAGGGTTGCCCTACGGTCTGGGTAGTCCTTGCCATTCTAGCAGTTACTTCTTGTTTTCCATTCTCTGTAAACTTTTCCAGATTTCTCCAGGAGAGAGCTTTGTTTACCCCCAAGGACTGGGCTTCACTCCTAAAAGCTGCTTCTAAACCCTTTGCGTGCAGGCCCCAGACAGTGTGGGTGCATGACTGCTTTATCTGTTGGATGTTTCCACAGGCAGGCTGTTGCTGCCAGAATTCTAGAAGCAGTGTAAACGGGCTGCTCATTCATTAGGTACGGGCAGGGTCTGGGCACTGGACTTTCAACACTTTCCTCCCGTGATTCTGGTGCCGTTAGTTTGAAAATCACGGCTCAGAGATCCCTCTGAACAGAAGGTGACCCGCCTCTAGCCATTGAAAGTGTCTATGTTTTGATTATGCAAATGGATTCTTACACGAATATGTTCTTACTAAGCAATGTGGAGGTCATGGGTAAAGCTAAGCGGCTCTCTGCTGGCCGCCCACCCAACCCCAGGCCCCTCCCAGGGTAGCCACTGGGATCATTCTGCTGCATAACCTTTCAGGCTATTTTCTCATGCACATACTTACTTGTGTGTACTGTGGAAAAATACAGGGGTTAAGAACACACAGATATACACTACGTATCTTCTGCGGTTTGCTGTTTTCACTCAACAATATGTCTTAAGGATCTTTTCGTGTTGATACATTTTGATCAATTTCCTCTCGAAACGGTTTCCAG
Seq C2 exon
GGCCCTGGTTAATGGTGGAGCCAGCCTGGTGTGTGGCAGCCAGGTCGGGCTGGTGTCTTCAGAGTGGCTGTGTCAGAAGGGCCTCGTGTATGACAGAA
VastDB Features
Vast-tools module Information
Secondary ID
-LOC155060:NR_036573:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)