HsaINT0094507 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr11:9776317-9779390:-
Coord C1 exon
chr11:9779314-9779390
Coord A exon
chr11:9778446-9779313
Coord C2 exon
chr11:9776317-9778445
Length
868 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
GTGCACTCATCCATTCACAGATT
3' ss Score
7.41
Exon sequences
Seq C1 exon
GTTGTCTGCAGAGTGAGATTATGGCGAAGCATTTTATTCTTTTTACAAACCTGCTTTTTCTCAGTTTTCCACATTGG
Seq A exon
GTATGTATTGGTGATAAGGAAAAAAAAACTACAAAAGATATTTTTTGAAAAAAAAAAATCACATGGAGAGAGAGAAAAGGGGACGAATTGGCCTATCAAGGGGGTTTCCGGAAGTTAACTTTCTAGTATCTCTGTTTGCATGTAGACTCCCAGGGTGCCCTGGGAGAAATGGAGAAATGAAGCCCAGGACATGAGGCATTGGGATGGATGGTCCATCTTTCACATGTGCTGGGATTAACTTCCTTTAAGAAAAAAGGAAGGCAAAAGGGTTCCCAGCCTTAGGGTTGGGTGGGGTAGAGGCTCCAAATAAACCAGAAACTCTTGAGTAGAGGTGGTCAGTCATTGCTGTCTGGTTCAAGCGCTGATTGGACCCAAGGGGACCAGATCCAGGATATATTTGAGAACAAGGAATTTATTTCAGAAAGGGGCCACTCAACAGTCAGCATTTACTAAGAACCTGCTTGGTACAGGGTGCTGGAACTACCACAACGAGGCTGCCCCTTCCCTTAAGGAGTTCTGGGCTGACTTTTGGGAAAGTTCATCAGCGGTGACGGGTAGTGAGTGAGGCAGATCAGCAGGAACATTACAAGCCGCAGGAACCGTCAGCTGCTGATAGAGGCCCTGGGAGGTAGAGTGGAGAACAGCTCTGGCCACCACAGCTAATGGCCACCAAGGGAGCGACAGGACCCTTGAGGGGAGAGCAGAGGCTGGAGGTCCTTGGGGTCTACTGGGAGGTGGCAGTCACAGGCCCTTGGGTCCTCTCCACAGCCTTGCTGGAACCTTCCAAAGAGCAGGTGTGACTGGGGAAGTGTGTTGCTGGGCTGTCACCCTCACCTGGGACCTCCTCTGTGCACTCATCCATTCACAG
Seq C2 exon
ATTTGCCAGCTACCTGCCTTTGCAGGACACCTCAGAAGTTACAGACTTGCCTGTGGAAATGCAGAGAGCACCTGAGGTATTTCCCGGACTCTCCAGTAGTAGCCTTGAATGGCTGACCAACCGCAGTCACCTGCCAGATCTTCTCAGAACCGGCCAGCCCACCAGCGACAGGCCCATTAAGTGGCCTGGCCCAGCCCAGATGGAAAACCCCCTCCACGTGACTTTCTAAAGAACATGCATGAAGACAAAACACCAGGTGCCTCAGGTGTGACACCCTGAGGACACATCACCTGTACAGTATCCTAACCCACCCAAGATGACACAGTAAGGTAAAACCACAGTAGAGCCCAGGCCTGTTTGACTCTGAAGTCCAGGCTCCTTTCCAACTTAGTGCCCTAAAGGCCTGATTGGGGTGGGGGTAGGCAGGAAGATTCAAGCACTGATTGTTTGTAGCCCAGGCTGGGAGGGCAACAGCTCTAGAAAAAAAGTCACTCACTGCTTTAACCATCTTCCAGCTAACTGCAGTGAGGTGTACAGGGCCATGGGGCTCTGGGATGAACTCTTCCACCTCTACACCTTGTAAACAAGGATTCCAGACACACCCTCCAAATGGGAATGGAGACACACGTTTGGCAGAGTTGGACAGTAACGCTGCTCTCCTATCAGCCTGGACTTTGAGGGGAGTGGAAAACATGAGTGTGGAGGTGCAGCAGTCCTGGTATCCCCTGAAACCAGCCTGTGGGGGGAACAGTCTTCCCAGGGGAGCTGCTCAGGATCGTCCTGGTCCCATGCATCAGGAAGAAAAGGGAACCTGAGAGCAGAGGGAAAATGCAGAAAGTGGGGCAGGGAGACTGCTCCCTGAAACCCCCATGGGCTGCTGGTCCAAGCAGAAAGTGTTGTCGGAGGGGGGAGAGGCAGGGTGAAATGGGACAGGAAACGAGGACTTCCGATGAGGAGGAGGAGGGGGCAGTGGGCTGCGGGTCTTGGGGACTGAACAGAATGGGGTTTGCTAGACAGAGCTTTCGTCTACCCACTCCTGAAGTCCTGCTGGACCTCAGCTGGCCCTTGTGAACTGTTGAGGGGGATATAAACACAAAGGCCTGCATTCCTGTGGGTGCACAATCCTAAGAGACCATGGACTGCCTGTGTGTGGTGGGAACAGGAAAAGGAGGCTGAGTGTAGCCCTGCTTGGAATTTAGTGTCCACCACAGATGTATCCACTACCCAGGGCCAAAGACTCGGCAGCCTCAGAAGACTCAATGGAAGCTGAGCACAGGACTAGAAAGGGTCAGGGCCCTCCTCTGTATGTAGGGGTGGCACATGGCCACTAGCTGGGTGATGGGGCACTGAGAAATTAAATGTTTGACATAAAAATGTAATCAGGACCCGAGAGGAGGTGGGTGGTGTAATGAACAGCATCCTAGAAGTCCGGTACAGATTTCACGTGTCACCTTCTAGTTCCTTATCTGAAATTGAAAGGTGAGGTCAGGTGCAGTGGCTCAGGCCTGTAATCCCAGCACTTAGGGAGGCTGAGGAGGGCATATCATTGAGGTCAGGTGTTTGAGACCAGCCTGGCCAACATGGTGAAACCTCTACTAAAAATACGAAAATTAGCCGGCTGTGCTGCACACGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCCCTTGAACCTGGGAGGCAGAGGCTGCAGTGAGCTGAGATCACACCACTGCACTCAAGCCTGGGCATCACAGCGAGACTTCTTAAAAAAAAAAAAAAAATTTAAAGGTGAGCCAGTTCAGGCTTCTAGAGGCACTGCAGTTACAGACGGTAAACTGCACAAATCCTGGGTGTGAAGCTGTTTTTTCCTGTGTAACCACCACCCATTGACAGCATCCCAGAAAGTTCAAGTGTGTCCCTTCCCAGTTTACAGCCACCCGCCTCCCACCCTCACTTCTAAATCCACCGATTAGCAGTGTGTCTTGGAAATTAATATACAAGGAATCATATAGTATGTGCTCTTTTGTGTTTGGCTTCTTTGCTCAAGATGTCCGTGAGATTCAGCCGGGTTGCCTCTCTCTGTAATATGTTAATTTAGGTGTAGTATCCATTGTCTGGAAATACAATTGTCTATTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
-LOC440028:NR_033972:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGTGAGATTATGGCGA
R:
ATGTGTCCTCAGGGTGTCACA
Band lengths:
358-1226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)