HsaINT0094771 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr10:135269741-135272830:+
Coord C1 exon
chr10:135269741-135270058
Coord A exon
chr10:135270059-135270782
Coord C2 exon
chr10:135270783-135272830
Length
724 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
GACCGGCCTGTGCTCCACAGACG
3' ss Score
8.1
Exon sequences
Seq C1 exon
GTGGACCAGGTGCTCTGAGGCTGGCGTACAGACACAGCACGTGCGACGGAGTGGTGTTGGTCCGACACCACGGGGCATGGGGATACGTGTGCAACCAGGAGTGGACGCTGGCAGAGGCCTCTGTCGTGTGCAGGCAGCTGGGCTGCGGCCCTGCCGTGGGCGCCCCCAAGTATGTCCCGCTGCCTGGAGAGATGGCCCAGCCCTGGCTTCACAACGTGTCCTGCCGGGGCAACGAGTCCTCCCTCTGGGAGTGCAGCCTTGGCTCATGGTGCCAGAGCCCGTGCCCCCACGCATGGGTGGTGGTCGCGCTGTGCTCCA
Seq A exon
GTAAGTAGGGAGGAGTGAAGGGGACGGGGCTGAGGAGGAGGAGGAGTGGGAGGACGAGGAGGAGGACTGGGAGGACGCAGAGGAGGACTGGGAGGATGGCGGGTCTCGGAGACGGGCGGGGAGGCTGTGGGTCTGGAGCTCTCTCTGGGAGGGGCTCCTCTCTGGGCACCGGGGCCATCCTGACTGTAAGATTCAGCTGTGGAAAAACCAACGCCAGGGAGAGTCAGAGATTGGAGGAAGGAAGCAGAGTGCGGCCCAGGCGTGGGGGAGGCAGCAGCCGAGCGGGGGCGGGGTCTGTGGACGCCTGAGGCCCACACAGGTAGCTGATGATGGTTTCTTAGACAAATGACAGACAGGTACACGCTTTCCCTTTGAGGTCTGGCTCGAGGGTCCTCAGCTGTCCCTCACATTTTATGTGGCTGTGAGGACCCCCTCATAGCGTCCTGCCTCTGAGGCTGAACCACCTGGCCAGGACCTCCTACCATTTTGGGGCCCAGTGTGAACGGATCCTGCGGGGAACCTTGTTTCAGGAGACCAGCAGCAGAGCATGAAGCTGGGCACAGGGGTCTCTCTGAGCCCAGGGCCCTGTGTGACTGCCCGGTCACCTGCCCCTGAAGCTGGCCCTGGCTCAGCCCATCACTGTCCTCCCTGAAAAAGGAGCTGCCGAGTGACCATGCGGCCAGCTGGGTCCATACCTTAAGGAGGACCGGCCTGTGCTCCACAG
Seq C2 exon
ACGGCACTTTCCGGGAGCTCCGGCTGGTGAAGGGCCGCAGTCCCTGCGCGGGACTCCCCGAGATCAGAAACGTGAATGGGGTGGACCGCCTCTGTGTCCTGCATGTGGAGGAGGCCATGGTGTTCTGCCGGGAGCTGGGGTGCGGCCCTGTGCTCCAGGCCCCCCGCCGGGACGTGGGCGTCGTCAGGAAGTACCTGGCCTGCAGGGGTACCGAGCCCACCATCCGCAGCTGCAGACTGGACAACAACTTCCGCAGCGGCTGCGACCTGCGGCTGGACGCAGAGGTGGTCTGCTCAGGTGAGGCTGCCACCTGATGTTCCCAGTGACCCTTGGGATGATGCTGGGCCCGGACCTGGGGAGGGCAGGGAGAAGGGGGGTGGGCGTTCCCACGGATGGGCCCCCCTGTCCTGCATGAGACATTGGGCGCAGAGGTGGGAAAGGGCCTCAGCTCTCACGCTGGTTCTCAGCAGAGTGGAGCTGAGTTTCTGGTGGCCCCACAGAGGTGTCCTGGCTCAGAACCCGCAGGCCATCTAGGGGTCCTGGCTGCCGCTGCAAGTCTGAGCTGCCTCAGCTGTGATCTCTGCATGTCTAACATGGATCGGGGTTGGGTAGAGGTCACTTCTTCCCAGCCCTGCCTCAACTGTGTGTGAGCTGCACTGGCCTCACAGCTCCTGGCCTTGTTGTGCATATGAGGAGCAGCTGAAATGAGGTGGATAGTCTGCCTGCTGCGGTACCCCAGAGAGGGTGGTGCTCAGTGGACCAAGGGGTGCCCTGACCTCGCCTCTGGGATTGCAGAGGGTGTTGCTGTCATGGCCTCGGACAGGCAGAGGCTGTGAAATACGTGAGCACCTGCAGCAGGTGACCCTGACCCTGACCTTGGTGATGCGGCCAAGGACGTCTGCTCTGCTCTGGGTGCCGGGTGGAAGGGCCTGTGGCTGCAAGTTCCTGCCTGTGCTTGGTAGACCCTCTGCCTAGATGCAGGTGATGGCTCCTGGCTGAAGCCTTCCGCAGTCTGAGGCTCAGGGCCAGGCTGTTGACCTGAGAACACCTGTCTCCTGCCTGAGAGGACGTCTGCCCCCAGGACACACCGAGGCCCGACTGGTGGGCGGCGAGCACCCCTGCGCCGGGCGCCTGGAGGTGACCTGGGGCACCGTCTGTGATGCGGCCCTGGACCTGGCCACGGCCCACGTGGTGTGCCGGGAGCTGCAGTGTGGGGCGGTCGTGTCCACGCCCGAGGGCGCCCGCTTCGGCCGGGGCTCGGGGCCGGTGTGGACGGAGGCCTTCCGCTGTGCGGGCAACGAGTCGCTGCTGTTCCACTGCCCACGGGGGCGTGGGAGCCAGTGTGGGCATGGTCACGACGCGGGGCTCAGGTGCTCAGGTGAAGTCCTGTGTGTGGGCTCTGAAGGCTCAGCCCTGCCTTGTTCTCTGTCAAATCCCTTCGTGCCCTAAAGGTGCCTCTGGCCAGTAGGTGTGGGTGCTTTTGATGTTTGCTTCTGTTGGTTGAAAGAAGCGCAGGGAAGAGACTGGGTGTAGAGTGATGTACCCCAAGGCTGCAGCTAAGATCAAATTCTTCTGGAGAGCTGTGTGAGCTGGATGCTGATGCAGAGGAGGGTGGGGGAGCTGGTGAGACCAAGGCTGGGCTCTGTGCCCATCCCACTGGGTGTGAAGGAAGGAAATGACCACAGACAGCCATGTTCTGGGTCGGCCGTCTGCAAGCCAGGCTGACTCCTCCTCTCCCCCAGAGTTCAGGATGGTCAACGGCAGCAGCAGCTGTGAGGGCCGCGTGGAGTTCCAGGTGCAGGGGTCCTGGGCACCCCTCTGTGCCACCCACTGGGACATAGCAGATGCCACCGTCCTCTGCCACCAGCTCAACTGTGGCAACGCGGTGGCCGCACCTGGAGGAGGCCATTTTGGGGACGGGGACGCTGCCATCTGGCCTGATGCCTTTCACTGTGAGGGGACAGAGTCCTACTTGTGGAATTGCCCAGTAAGCACCCTGGGGGCCCCGGCCTGTGCCCCGGGAAACACAGCCTCCGCGGTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
-LOC619207:NR_002934:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATACGTGTGCAACCAGGAG
R:
CTCCACATGCAGGACACAGAG
Band lengths:
348-1072
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)