HsaINT0094773 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr10:135272991-135273674:+
Coord C1 exon
chr10:135272991-135273308
Coord A exon
chr10:135273309-135273381
Coord C2 exon
chr10:135273382-135273674
Length
73 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
CTGACTCTGTCTCTCCACAGGGA
3' ss Score
13.52
Exon sequences
Seq C1 exon
GTCTGGCCCACGCCCTGCGACTGAGGGAAGGACAGAGCCGCTGTGACGGCCGCGTGGAGGTCTCCCTGGATGGCGTGTGGGGCCGCGTCCTGGACGATGCCTGGGACCTGCGCGGCGCGGGCGTGGTGTGCCGGCAACTCGGGTGCAGAGGGGCCCAGCAAGCCTATGACGCACCTGCCCCCAGCCGCGGATCCGTCCAGGTGGCGCTGAGCCGCGTGCGCTGTCTGGGCACCGAAACCCGCCTGACTCAGTGCAACGTGTCCGCGACCCTGCAGGAGCCCGCGGGGACCTCGCGGGACGCCGGCGTGGTGTGCTCCG
Seq A exon
GTGAGGTCGGAACCGCGTCCCCCATGGCCCGTCGCCACGGGATCCCGGGCGCCCTGACTCTGTCTCTCCACAG
Seq C2 exon
GGAGCCTCAGGGTGCGGCTGGCCGCGGGGCCGGGGCGCTGCACGGGGGCGCGTGGGGCACCGTGTGTGACGATGCCTGGGACCTGCGGGACGCGCACGTGGTCTGCAGGCAGCTGGGCTGTGGCCGCGCCCTGAGCGCCCTGGGGGCCGCACACTTCGGAGCCGGGGCAGGGCGCATCTGGCTGGACGAGCTGGGCTGCCAGGGCCACGAGTCTGCGCTGTGGCAGTGCCCGTCGGCGGGCTGGGGGCGGCACGACTGGAGGCACAAGGAGGACGCCGGCGTCTTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
-LOC619207:NR_002934:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCCGCCTGACTCAGTG
R:
GTCCCAGGCATCGTCACAC
Band lengths:
167-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)