HsaINT0094778 @ hg38
Intron Retention
Gene
ENSG00000214279 | SCART1
Description
scavenger receptor protein family member [Source:EntrezGene;Acc:619207]
Coordinates
chr10:133466974-133468412:+
Coord C1 exon
chr10:133466974-133467353
Coord A exon
chr10:133467354-133467846
Coord C2 exon
chr10:133467847-133468412
Length
493 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CGCGGTGTCTCTTGCGCCAGTTT
3' ss Score
6.33
Exon sequences
Seq C1 exon
GGGCCCACTGGGAAGCATCATGTGGTTTGCTGGCAAGGGACGGTGGCCAGGGATGGGAGGGCACTGGGAGTCTGGCTATGTTGCCGTGGTCCCTCCATCCCAGCCCACAGCATCCTGCCTCTTTGCTGCCTGGCTGGGGTTCCTGCCTGGAGTTGCTGTCCTCCCTTGCCTGTGGCCACATCCACACTGAGGGCCTGTGTGTGACCATGCTCACCTTGCCTCAGGTCTGGGAAGATCCGAGGTATCTCCTGGAGAAGCCATCTATGATGTCATTGGGGAAATGCCGCCAGCAGGACTGTACGAGGAAATCATGGAGGCCGAGGCTGTGCTCCAAGATGAGGAGGACGGAAGTGTGGTGAAGGTGGACACAGAAGCCGCAG
Seq A exon
GTGGGTTTGTGCTCCAGCTCAGGGGTGAGCTCTGGGGTGGGCTACGGATGCTGACCACAAGATGCAGTGGAAAGGGACTCTGACCACAGGAGCCTGGCTTCAGAAGGCTGCTGACCACAGGGCTCATGGATGCAAAGGGACTCGTGGGCAGGGGAGAGCAGGGCCACACCCATGAGGGCAGAGTCAGTGGCTGGAGTCCCCATCGGAGAGGCCTGCCCTGTGGTGGGAGAAGAGGGCTGGTCGGGTGTGCTGGGAGCCGCGGGTCTGGCAGGGGCATATGCTGCAGCTCACTCAGCCTCAGTTTCATCACCTGTGGGAGCTGTGCTGCTGTCACAGGCTGCTTGGGGTGCTTCAATGTCAGGATGCCTTGAACATTGCCAGGTGCTTTCTGGTTGACATGTTTATGCGTTCCTGTCTTACGGGCTTTGCCAAATGTGCTCTGGGGACAACTTGCACGTGTGCTGATTTGGTCACGCGGTGTCTCTTGCGCCAG
Seq C2 exon
TTTCAGGGGAGGTGTCTAACCTCCTGGAGGGACAGTCTATACGTGCGGAGGGAGGACACAGCAGACCTGTTTCTCAGGGATATGACGAGGCTGCGTTTCCTCTGGAGGAGATGACGTTGTAAAGCAACCTGAGGATGAGATACACCAGCTGGCTGTCGAAATCACAGCTCTTCATTTTCTTGTACAATTGTAGTGGATTTCGTGAGAACACCTTGGATGCCTTTCTCTTGCAATGTCCTCCATGTCCATGTAAAATCCAGTCCTTCCAGGCCCTGCCTGGCTCTAAACCTCATCCCCTTCGAGGGCCATCTGCTGTGGACAGTTGTGCTGTGTAACCTTCAGATTTCCCACACATTACAGCAAATGCAAATACACATAGAAATCAGTGGTTCCATTTGTGGTTTAGAGACACATGGTGCCATCTTCATCTTCCGCTCCACAGCTCGCTTCTGGCACCCAGCAGTGGGTTGCAGAGCTCCCCATGCCAGAACCTTCCTCTTTTTTCTTAAAAACTCTTCTTAATTGAATCCAAAGTATCTTTTAAATGTTCTACTTGTGTAATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214279:ENST00000475114:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=NA C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTGACCATGCTCACCTT
R:
CTGTGATTTCGACAGCCAGCT
Band lengths:
351-844
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains