HsaINT0096253 @ hg19
Intron Retention
Gene
ENSG00000242108 | LRP1
Description
NA
Coordinates
chr12:57598193-57598532:+
Coord C1 exon
chr12:57598193-57598312
Coord A exon
chr12:57598313-57598409
Coord C2 exon
chr12:57598410-57598532
Length
97 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
3' ss Seq
TGTCCCCCTGGCTGCTGCAGCCC
3' ss Score
7.56
Exon sequences
Seq C1 exon
TGCGGACCTGCCCCCTGGACGAGTTCCAGTGCAACAACACCTTGTGCAAGCCGCTGGCCTGGAAGTGCGATGGCGAGGATGACTGTGGGGACAACTCAGATGAGAACCCCGAGGAGTGTG
Seq A exon
GTGAGATTTGGGGCGGGGCTCCCAGGCTTCCCAGTGGCCAGCAACCACCCCCACTCCCAAGACTAATTCTGGCTCTGTGTCCCCCTGGCTGCTGCAG
Seq C2 exon
CCCGGTTCGTGTGCCCTCCCAACCGGCCCTTCCGTTGCAAGAATGACCGCGTCTGTCTGTGGATCGGGCGCCAATGCGATGGCACGGACAACTGTGGGGATGGGACTGATGAAGAGGACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000242108-LRP1:NM_002332:71
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGCGATGGCGAGGATG
R:
ATCAGTCCCATCCCCACAGTT
Band lengths:
169-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)