HsaINT0096420 @ hg38
Intron Retention
Gene
ENSG00000081479 | LRP2
Description
LDL receptor related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr2:169198786-169201870:-
Coord C1 exon
chr2:169201628-169201870
Coord A exon
chr2:169198912-169201627
Coord C2 exon
chr2:169198786-169198911
Length
2716 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
ATCTGGTTGTCTTTTTCAAGCTG
3' ss Score
6.54
Exon sequences
Seq C1 exon
CACTTCACACCTGCTCACCGACAGCCTTCACCTGTGCCAATGGGCGATGTGTCCAATACTCTTACCGCTGTGATTACTACAATGACTGTGGTGATGGCAGTGATGAGGCAGGGTGCCTGTTCAGGGACTGCAATGCCACCACGGAGTTTATGTGCAATAACAGAAGGTGCATACCTCGTGAGTTTATCTGCAATGGTGTAGACAACTGCCATGATAATAACACTTCAGATGAGAAAAATTGCC
Seq A exon
GTAAGTTTATCTTAAGTGCTTATTGTGATTTTGGGTCTGAAGTCTTGGATCACAGGAGATGAAATTATTATATAAAAAAAAGGCTTTCCAAAAATAAAAACCCTAAGTATTTATCTAAAACGTAAATTTTTGGCTAGGCGCGGTAGCAAGTATCAACAAATACCAATCTTGTTTCATTTTTCTCTCCTTTTTTCTAGTATTTTAAAGTGACTCCTAGTCATGCACTTCACTGATAACATTTTGGAAAATAACTACCATGCCATTATAATGCCTGGCAAAATCAAAAGTGCTTACTAAATATCCCTGAGTACCTAGTCCATGTTCAAATTTTGTCACTTATCCCCAAAATGTATTTTTACTGTTCTCTGTTCAAGTTAGGGTTCAGATGAGATCTACAACTGATTTTGATTGTTATAATTCTTCAATCTCTTTTATGCCACAACACTTCCCACTTTTTAATGTCATTGATTCATTAGAAAGATTAGGTGATTTGTCCTGTAGAATATCTCACATTCTGGACTTGACTAATTGCATAATTGATCCATTTAATTTATCTTATCCCTCTTATTTCCTATGAACTGGTATGTAGACCTAGAGTTTTGATCATAACAGGTGCAATTCTTTGGGTAAGAGTATTTCAGAGGTGGAGCTGTGCCTTTCCTGTTGCATCACCTTATGAGGCACATGATGTTTTGTTGCCCCACTTTAAGTGGATTCTGGTGTCAGCCTGAATCATCTCTTATGAAGCTCCCATCATCCTTTCACCCAGTGGTTTTAGCATCCATCGGTGGTTGTTCCGTAAACCCATTATTTCTTTAAGAGTTATGAATGGGCTCTTTAGAATTCTAGTGTTCCTGCCGCATTTATTAGCTGAAGTTTGATAAAGAAGACATTTCCCTTACCAGCTTTTGTTGGTAATTAGAATCTACAGGATAAATACCTTTTGCTTGTCAATTTTCAGAGTAATGAGTTGGTGACAAAGGAGAATTAACTTTTTGTTTAGTTTAGTTTAGTTTAGTATTATATTGAACTCTTTGATCTTCATGTATTTGATGAGTTTTAATACAGTGCTGTCAACTGTTTTTTCTTGGTGCCCAGTTGTCCAAACTTAGGCCAATGGGAGTCCTTAACTTGAATTTTCTGTTCTTTGGCATGACCCCAATCCATCTTCTTATAGCTCAAGCTTGTCTTATATTTCCTGTCCCAGTCCTGGAATTAGCCACTTATCCAAGGAGACCTCATTCCCTTTGTGGTACTTAGAAATTATCACAGGGTTGAGTTGCTCATTCCTACTTAGCTTTCATTGCTTCTAGTCCTTTTCAATGGTCAGAGCTAGGAAATACAGTTTTTAAGGAAAAAAAATTTTTTTATTTTTTTGAGATGGAGTCTTGCTCTATCGCCCAGGCTGGAGTGCAGTGACGCGATCTCAGCTCACTGCAAGCTCTGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGGGTAGCTGGGACTACAGGCACCCGCCACCATGCCTGGCTAATTTTTTGTATTTTTTAGTAGAGACGAGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCACCCGGCCAGAAAAAATTTTTATTGATATTTCCCATTGAAATTTAAGATTACAGGTTGTTTACATTTTAGATTTTATAATGACATCTCTTCTTATGCTTAAAATCATAGTTTCTCTTGACATTTAGTTGTTTTATTATATAGTAATTTCAAAATGCCTATAATAATTTCAACATTATTATAACCACTCAAAGAATACTATTAACAATAAGTCTACTAAGTGCGAGATTCTTCTTGCTTTTTAGATTATGTCCCACTAGAGATATGCAGTCAAAGGTATGACTTTAAAGATATTTGGAATTTTTTTTTCTGCAGGGTTATGCTATCAACCTGATATATAGTTAGCTTTATCTATTGCTGTTTCCAAATTTTATTTTATTTTATTGATTTTATTTGTACAAAATAGCATACATAGTTCCAAAGTTAAAACTACATGACGAGGTGCATTTATAGAAGTCCTTCATTTCTTCCTCTCCTTTCTGCTTCCTCTGTGCTCTTCTCAGTCTATCCAGAGAGATGACAATTTTTGTTAGTTTATCTTTTCTTTGTTGTTATTGTTTTTAATATAAGCATCTCTCTCTTGCTACACACACACACATACACTTATATCGTCCTTTTTCTTACACAAAAGTTAGCCTACTGTTTTGAATCTTGCTTTCTTACTATTAACAATATATCCTGAAGATTATACTGTCATTACTTATCAGTATATAGAAATCTTCTTTATTCCTTTAATAGCTACATATTACTCCATTGTGTGGAAATGCCATAGTTTATTTTACCAAGAGTTGGAACTCTTGTTGATGCTATTAATTAATGAAAACAGATGATTTAAGTTACAAACCAGTGTCTCCTCTCCCTTCTCCCCAGTATCAGCTGGAAATATGTTTTTTTACTACAGAATCTATAGGTAACATAAGTATCATGGATCCTGCCTTTCTGATGGCTTTGAAAATGCCGCCCTTCCAGTGGTTTGAGTTCCACAATAGATGTGTTAGCACGGATACTGTTCATAATACATATTTGGTGGATATATTCCTAATATTTATCTGGTTGTCTTTTTCAAG
Seq C2 exon
CTGATCGCACTTGCCAGTCTGGATACACAAAATGTCATAATTCAAATATTTGTATTCCTCGCGTTTATTTGTGTGACGGAGACAATGACTGTGGAGATAACAGTGATGAAAACCCTACTTATTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000081479:ENST00000263816:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=45.1),PF0005713=Ldl_recept_a=WD(100=48.8)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=93.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development