HsaINT0097540 @ hg19
Intron Retention
Gene
ENSG00000119681 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:6715]
Coordinates
chr14:74991827-74992817:-
Coord C1 exon
chr14:74992778-74992817
Coord A exon
chr14:74991929-74992777
Coord C2 exon
chr14:74991827-74991928
Length
849 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTCCCCTCTCTCCTCCACAGGGA
3' ss Score
12.88
Exon sequences
Seq C1 exon
GTCACGACCAGTGTCACTCATGCACCTGCCTGGGTCACAG
Seq A exon
GTGAGTCCCTCTTCCTGGCGGCTCCTAGGCAAAAGAGAAGGGAGGGAAAGAGCCCTTAATCAGGAGTGGAGTTACTATGTGTGAGCTGGTTCACGCTCACACACACATCAGAGGAGGGTGAGAAGGACGTGGCCTGTGAGTGCTGTTTCTGGGAGCTCTCTATACACCTAAGGTGCTGTGAAGTCAGCGAGAGACCCCATGACGCTTCACAGATAGTTTTCTAGCCACAGAACTCTTTGCAAATTTCATGGCACCACTTAGCACATAAATCAGAACAAAGAGACAGCACTAGCTGAAACAGGTGTTTGGCTGGGTCGCTAGACTCTTTCCCCCAAGAGGTCTTGTCCTGAAACCACTACTTGCCTGTCACTGGTGTTGGGTTCAGACATTGGAAGGCTGAGCTCATGCTTCTTGTAAAACGGTAGAAGACACTGATGCCTGTCTTGCAGACTCTCAAAGCAAATAAGATGTTGGTATTTGTGGCAGAGCTCTGTAAGCTGTGAAATGCTTTGTAAGCAGAAGTGAAAGAATGTTGAAGTGGGAATTAGGAAACCCAGGTGTCAGCTGTGCCTCCGACAAGCTGACTGGCCTTGGACAAGTGACCATTTCTGCAAGCCTCAGTCTCCTGGCCCTGACATGGAGGATTAGACTGGATGTGCTCCAACGCCTGTTAGAGCTCTCAGATTCTCTAAGTGGGGCCAGATCAACTTTCAGGAGACTGGAAGGCATGGGAGTGACCCACCCCAGGCTTCACCCTTCGTTCTTGGGAGTCTGAGCACCAGGGAAGAGGGAAGGGCCATGGCCAGCCAAGGGGCCACAACCCCACCTCTTCCCCTCTCTCCTCCACAG
Seq C2 exon
GGAATGCCACAACCCCACCAATGCCTGAACAGGGGATTGCAGAGATACAGGAAGAACAAGTGACCCCCTCCACTGATGTGCTGGTGACCCTGAGCACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119681-LTBP2:NM_000428:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)