HsaINT0097552 @ hg19
Intron Retention
Gene
ENSG00000119681 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:6715]
Coordinates
chr14:74973882-74974798:-
Coord C1 exon
chr14:74974676-74974798
Coord A exon
chr14:74974014-74974675
Coord C2 exon
chr14:74973882-74974013
Length
662 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TGGCATGGCTCTGGGGACAGATA
3' ss Score
3.43
Exon sequences
Seq C1 exon
ATGTGGACGAGTGTGCCACCACAGACCCGTGTGTGGGAGGGCACTGTGTCAACACCGAGGGCTCCTTCAACTGTCTATGTGAGACTGGCTTCCAGCCCTCCCCAGAGAGTGGAGAGTGTGTGG
Seq A exon
GTAAGGGCTCTGGGGGGAGGGCACAGGGCTCTGCCCACATCTGCCCATCTCTACACTGCCTGGTCCTTAGCTCCCATGGAGCAGAGCACTTTCCACAGATGAAGTGTCCAACAAATAGTGTATGTATTGAGACTCAGGGCTCAGGGGCTGTCCAAGGATGACAAAATGAAGACAATCATCATCTTCGTGCTGGCAGAGCACACAATCTAGTTTTAAAGGCCAAATTGATTCAATAGACATTAAACACCTGCTATGCTCAATGTCTTTTGCTAGGACAAATAGACAGTTATGGATGATCTTGAAAGCAAGGGAGACAGATATGAAGACAACTCTCTGTAATACACTATGCTGAAGGCTTCGTGTAAAGAGAAGTACAGTGCTCTGCTGGTAGGGATAGGAGACAGATGGGGGCAGTGGAGGAAAAGGAGTGTCACAGAAGGGCAGGAGCTCACTGCTTCCTAAATAGCATACGGTTCTCTTCCCAGAGGCTCAGCCCTGCAGGGTCAGGGGAAATCGTCCTGACCTTGATGTGCTGGGGTTGGGATGAGCACAGTAATTTGGAATAGATCAAGAACCCCAGAGGTTGTGGGGCATGACCCTGTGGGACCACAGCAGTGACCTGGCCACCTCTGTCCTCTCTCATGGCATGGCTCTGGGGACAG
Seq C2 exon
ATATTGACGAGTGTGAGGACTATGGAGACCCGGTGTGTGGCACCTGGAAGTGTGAAAACAGCCCTGGCTCCTACCGCTGTGTTCTGGGCTGCCAGCCTGGCTTCCACATGGCCCCGAACGGAGACTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119681-LTBP2:NM_000428:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF062476=Plasmod_Pvs28=FE(28.0=100),PF0764510=EGF_CA=WD(100=95.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGACGAGTGTGCCAC
R:
CAATGCAGTCTCCGTTCGGG
Band lengths:
255-917
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)