HsaINT0097572 @ hg38
Intron Retention
Gene
ENSG00000168056 | LTBP3
Description
latent transforming growth factor beta binding protein 3 [Source:HGNC Symbol;Acc:HGNC:6716]
Coordinates
chr11:65547920-65551224:-
Coord C1 exon
chr11:65551126-65551224
Coord A exon
chr11:65548046-65551125
Coord C2 exon
chr11:65547920-65548045
Length
3080 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGACCTGGCCATGCCCGCAGAGA
3' ss Score
8.32
Exon sequences
Seq C1 exon
AGCTGATCTCCCGTCCCTCGCCCCCGACCATGCGCTGGTTCCTGCCGGACTTGCCTCCTTCCCGCAGCGCCGTAGAGATCGCTCCCACTCAGGTCACAG
Seq A exon
GTAAGGCCCGCCCAGCAAAGCCACCCCTGCCTAGGCCACGCCCCCACTTTAGTTTTCTCTCCTCCCTCCCGCCCCCAGGCATTCCCTAGCGCTAATAGGCTAGCGTGTATCCAGGGCTGGGCACTGGGGAAGCCTGGTGAGCACCAGAGATCCCACTGCCCTAAACGATCCAGGTAGCATGGTGGTTAGCCCATTCTGAGGGATTTCATTCATTCAACAAATACTTATTAGTGTTACAGGTCTTTTAGAATTTGTCTAGCAGGTTTCCCAGTTTTTTTTTGTTTTTTGTTTTTTGTTTTTTTTGAGACGGAGTCTTGCTCTGTCGCCAGGCGGGAGTGCAGTGGCGCAATCTCGGCTCACCGCAGCCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGCGCCACCACGTCCAGCTAATTTTTTTTTTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGGTGGTCTCGATCTCTTGACCTCGTGATGCGCCCGTGTCGGCCTTCCAAAGTGCTGGGATTACAGGCATGAACCACTGTTCCCAGCCCATAACCATCTTTCAAAATCTGTTCAGAAAGCCTTCTATCATTGCCACCCTACTTATTATCACAACCCTCAGAACTCCTTCCTTCTACTCTGATTTTTTTATTTTTATTTTTATTTTTTATTTTTTGAGATTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCACCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCACCACCACACCCGGCTAATTTTTTTGTGTATTTTTAGTAGACATGGGGTTTCACCATGTTAATCAGGATGGTCTTGATCTCCTGACCTTGTGATCCGCCCGACTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACGCCTGGCCCTGATTTAGTTTTTCATAGCATTTATAAGACATAGGAGATTCTGCTTATTGATCGGCTTGTTGCCTGTCTGCTCTGCGAGGACAGGAAATTTTTGTCTGTTTTTGTTCATGCAATATCCCTAGCACCTCAACAGTGCCTGGCACATAGTAGGTGCTCAAGAAATATTTGGGTTCCTTTCTTTCTTTTTATTTGTTTAGTTTGTTTTTTGAGACAGGGTCTCACCTTGTGACCTAGGCTGGAGTCAGTGGCAGGATCATGGCTCACTACAGCCTTGACCTCCTGGGCTCAAGTGATCTTCCAGCCTTGGCCTCCCAAAGTGCCAGGATTACAGGTGTGCGCCACCATGCTCTTTTTTTTTTTTTTTTTTTTCCCGGCCTGGGGAGTTTTCCTGTGAAAACTGGGAAACTGTGGCAGGGTGCAGTGGCTCACGGCTGTAATCTCAGCACTTTGGGAGGCTGAGGTGGGTGGATCACGAGGTCAAGAGATTGAGACCATCCTGGCCAACATAGTGAAACCCAGTCTCTACTAAAAATCCAAAAAAAAAAAAAAAAAAAAAAAAGATTAGCTGGGCGTGGTGGTGCATGCCTGTAGTCCCAGCTACTCAGGAGAATCACTTGAACCTGGGAGATAGAGGTTGCAGTGAGCCAAGATCGTGCCACTGCACTCCGGCCTGGGGACAGAGTGAGACTCCATCTCAAAAAAAAAGAAAGATGGTTAGAAATGCCAGAGACATGAGGAAGGGAGGGGCATTCAGGTTGGGAAAAGGATATCACAAGGGAAGTTAAGTTGGGCAAAGGCATGGAAGCATGAAACACTGGTGGAGGAGGGAGAACCCACACACAGGCCAGTGTCTCTGAACCAGGGGAAGTCCAGTGCACTGAGCCTTGTCAAGGAGGCTTGAGTTTAATGCCAGAGGCTATGGGCAGTGTCTGCAGGATTTTGAGCATCATAATTGCTAGCTCAGACTGAGCAGTCCCTCTGTGCCAGGTACTGTCTGAAGAGTTTTACGTTCTAAATACCATTTAACCTTCTCATACTCTGCAAAGTGAGCGTTGTTAGCCTCGTTTTCCAGATGAGAAAGCTGAGCCTCAAAGAGGTTCAGTAACCTGCCCCAGGTCACACAGCTGAGCCGTGTTCAAGCCCATGCCTGTGTGGGCTTCAAAAGCACAAGGGAACTGCCAACCCAGCTGAAACCCTGATCCTCCATGAGCTCCTAGGGTTAGGGCTCAGGTGGGAGATGGCTGTTCTTGGGGGCTTTGGGAATGTGGACAAGGCCCCTCAAAGGAGGGGCTGTTAAGGAAGCCTAAGGAGAGGTACTCCAGGCAAAGAGAACAGCCTGCAAAGCCCACTGGCCAGGTGAGTTTGGGGCAGAGCAGAGTTCACTGTTATGGCCCAGGCTGCATGGCAGGAGTGAGGGGGAAGGGGTGTGGGAAATGAAACTGGTGAGCAGTGAGGATCCAAAGGAGGGGAGAGGCTGGAGGCAGGGAGTCCTGGGCTTGGTGACAAAGAGAGTGAGGGGGGTGGTTCCTGGATCTGACTGCCTGTGCACAGCTTTGGCACTAGTTAGGATTCCCAGGAAACCAGCTCCTGCTAGTCTTGGGAGGGGGTAATCAACCCTTCTGGAATAGGGGGTCGGGTCCCTGGGGCAAGGGCTTATGGAGTCACTGGGCTAGAGGACACTGGTGTGACCGAGGCTATAGAGTTTAAGGTATTGAGGCGACTGGGGAGAAAGGAGTTTTAGTCCCTTGGGTGGGAGTACTGGGACGACTGAGGGGCCCTGAGGGGATGTGGTTTGGTTTGAGGTGAGTGGGGTCAGGGTCTTGGAGTGAACCGGGAATGGAAGTATCCGGGCCTGGGTGTGGGGTGATACGGCTGTCAGGGGCCTGGAGTCCTAGTTTGGAGCTTTCTGGGGTCTTGATATTGGGGTTATCTAAAAGAGAGAAATAGGACATCCTGGAGTTGGAGTATGGGCGTACAGGAACCTGAGGTCATGGTGTGACTGGGGTGTTGAGGTCTGCCCTGGGGATATGGCAGAAGGTGAGCGCTCCCTGCTCTGCCGCTTGACCTGGCCATGCCCGCAG
Seq C2 exon
AGACTGATGAGTGCCGACTGAACCAGAACATCTGTGGCCACGGAGAGTGCGTGCCGGGCCCCCCTGACTACTCCTGCCACTGCAACCCCGGCTACCGGTCACATCCCCAGCACCGCTACTGCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168056:ENST00000301873:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=WD(100=67.4),PF0764510=EGF_CA=PU(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development