HsaINT0097598 @ hg19
Intron Retention
Gene
ENSG00000090006 | LTBP4
Description
latent transforming growth factor beta binding protein 4 [Source:HGNC Symbol;Acc:6717]
Coordinates
chr19:41103141-41105161:+
Coord C1 exon
chr19:41103141-41103286
Coord A exon
chr19:41103287-41105102
Coord C2 exon
chr19:41105103-41105161
Length
1816 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTCCACTCCACTATTTATAGCGT
3' ss Score
5.07
Exon sequences
Seq C1 exon
ATGCCGAGGCCTGGCACCAGCGGCCGCCGCCCCCTCCTGCTGGTGCTGTTGCTGCCGCTCTTCGCAGCCGCCACCTCCGCCGCCAGCCCCAGCCCCAGCCCCAGCCAGGTCGTCGAGGTCCCGGGGGTCCCCAGCCGCCCGGCCAG
Seq A exon
GTAAGCCCCCTGCTTCCTTGTGCCCCTTCCACCCAATAAGTCTGGTGGTCCAGGAGGACCACGGCTTTCGGATTCAGGGGAAACTCGAACCCACTGCTTCGATGTGGAGATGCAAAGAGGGCCCTTGGATTTATTAGGCGCCCTCAATTTGTAGGGGTTAGATTCGGGGAGTACTGAGATTTTTAGGGGAAAGAGTCCCCTTTATTGTGGTGGAGAAGGCTAAGTCTCCAGAGAATCCTGGGGTTAGTTCGGGGAAAGGTCTCTAGTTTATTGGGGCAGGGGGTGGGGGGCTGAGCTCTCCTAGAATGATAGAGACGTGTGGGGTCTTCGAGCTAGGATGGAGCGCCCCAAGTTTCTTGGGCGCGTAAGGAGGAAAGGTGTTGGGGGATTCTGGAGGGACTTTATGAGGCCGCTGAGTTGTCCTGGTTTTCTAGGATTTGGGGGCTCTGTGTTCATGAAAAGCGACCTTTGGGTTTTTCGAATTGGTCAGGAAGACATAGACTCTTGCGTTGATGGTGGAGGGGCTTGTGGGGAGTGGGGTCGGGTGGGGGAGTCCTCAGGCTTCAGAACGGTTGGGGATGCTCAAGTTTCCTAGAATTAGAGGACTCTGGGATTGAATGAGGCTCCAGTGATTTCACCGCGAGAGATCCAGGATTCCCTATAGATCTGGGGGCTATAGGCGCCCTTCCTGTCTGCGGGTGACGGGACTGAAGGAAGCCGTCTGCCCAGCACCCCCACCCACCCTCCCCGCCTGGCGGCCCAGCGCTCCGTTACAAAGGCCCCGGGCTCCTCTCCCGCCTGGGTCTCTGCGAATGCGTTTAGTAACCCGAGCCGCGGCGGGGGCGGGGCCGGGAAGGGGTTAACCTGGAGAAAAGGCGGGAGGGATGACGGCAAGATCGGGGATCCCCGAGGCTCCCCACCAGATGGCCTCATCCTCCACTCGGCCCCACCCACCTGAGAGGGGCCCACGCGCTGGACACCCCCCTCTCTGCACCCCCCCACTGCTCTCCTCTCGGGGTCTGGGCGCGCGCCCTCGTCTCTAGACCCCCTTAGCCTGGGGATAATGGACTTGTCTGGGGGGCCCCTTCATTGCGACGCACTTGAACCGGAGCTGGAAGCTCCGCCACTGAGACCCTCTGGGCTGGGAGATGTCTGCAAGAACGGCACCTTTCTCCTGGTCAGGCGGGAAACTGAGGCCCAAAGACCAAGAAACGCTGGCTTCTGGACACACATCGTGGAAGGGCAAGAACGGGCTAGAACTCAGGCTCTGGGATTCTCAGTCCTGGACTGTGACTCCCGTTATCCCCCTCCACCTCAGCACCCTGCTGGACCCACAGTCAGAGGGAAGAGCCTTCCCTCCCCAGCTGCCGAGGCCTGTGAAAATGGCGCCACCTGTCGGCCAGGCTCAGGATGGCGTCTGAGTCCCGGACCGGGATGTGCGGGAGGGCGGGGTTCTAGATTCCCAGACAGTGCGGGCTTAGAAATGCTCTTAGAAATCGAGTCTTTTGTTTTTGTTTTTGTTTTTTAATCACTTTTAAAAGGCTTTAAAATAACGTATTTTTTCAATAAAATCGTACGCCAAAATCTCTTCATAAGACAAAAGTACGGTTTCTGTGCCCTTCAGCCCGAAGTCTAAGCCAATTTGCCTCCCATTGTACAGATGGAGAAACTGAGGCGTGGGGAGAAGAACCTCGTTAGTCATATACCTGTTTCAAGCCCCCTCAGGATGCGTCTTGGTTTCCCCTCCCCGATTGCCCTCCTTTGCAGAGTTCTGGGGTGCTAGGGGCCTGAGTGACTTCCACTCCACTATTTATAG
Seq C2 exon
CGTTGCTGTTTGTCGCTGCTGCCCGGGCCAGACGTCTAGGAGGAGCCGCTGCATCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090006-LTBP4:NM_001042544:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.367 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)