HsaINT0098693 @ hg38
Intron Retention
Gene
ENSG00000177239 | MAN1B1
Description
mannosidase alpha class 1B member 1 [Source:HGNC Symbol;Acc:HGNC:6823]
Coordinates
chr9:137107250-137107662:+
Coord C1 exon
chr9:137107250-137107447
Coord A exon
chr9:137107448-137107530
Coord C2 exon
chr9:137107531-137107662
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
GAGCTCTGCTCCGCCCACAGCCA
3' ss Score
6.58
Exon sequences
Seq C1 exon
GACCACCTGGTGTGCTTCCTGCCAGGGACGCTGGCTCTGGGCGTCTACCACGGCCTGCCCGCCAGCCACATGGAGCTGGCCCAGGAGCTCATGGAGACTTGTTACCAGATGAACCGGCAGATGGAGACGGGGCTGAGTCCCGAGATCGTGCACTTCAACCTTTACCCCCAGCCGGGCCGTCGGGACGTGGAGGTCAAG
Seq A exon
GTGGGCCTGGGCCTGGGTCAGGGTCCATCAGGAGGAGGGTGCTGGCAGGGCTGGCCTTGCCCTGAGCTCTGCTCCGCCCACAG
Seq C2 exon
CCAGCAGACAGGCACAACCTGCTGCGGCCAGAGACCGTGGAGAGCCTGTTCTACCTGTACCGCGTCACAGGGGACCGCAAATACCAGGACTGGGGCTGGGAGATTCTGCAGAGCTTCAGCCGATTCACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177239:ENST00000474902:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.081
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(14.8=100)
A:
NA
C2:
PF0153215=Glyco_hydro_47=PD(15.0=41.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAACCGGCAGATGGAGAC
R:
CAGTCCTGGTATTTGCGGTCC
Band lengths:
183-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development