HsaINT0106738 @ hg19
Intron Retention
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7512]
Coordinates
chr11:1086247-1087601:+
Coord C1 exon
chr11:1086247-1086486
Coord A exon
chr11:1086487-1087444
Coord C2 exon
chr11:1087445-1087601
Length
958 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
GACCAGGGTGTTCTCCCCAGGTG
3' ss Score
7.66
Exon sequences
Seq C1 exon
GGCACCGTGTGTGGCCTGTGTGGGAACTTTGACCACCGCTCCAACAACGACTTCACCACGCGGGACCACATGGTGGTGAGCAGCGAGCTGGACTTCGGGAACAGCTGGAAGGAGGCCCCCACCTGCCCAGATGTGAGCACCAACCCCGAGCCCTGCAGCCTGAACCCGCACCGCCGCTCCTGGGCCGAGAAGCAGTGCAGCATCCTCAAAAGCAGCGTGTTCAGCATCTGCCACAGCAAG
Seq A exon
GTGGGCTGGCCGGGCCATGGTGGGGCAAGTAGGCAGAGGAGGGCTGTAGGTGGGCTGTGACTGTGGGCTGGGGCCATGGGCGGGGCCGACTAAGCAGAGCAGGGCTGTAGGTGGGCTATAGCTGTGGGCGGGGCCATGGGCGGGGCCGACTAAGCAGAGCAGGGCTGTAGGTGGACTATAGCTGTGGGCGGGGCATGGCGGGGCTAACTAGGCAGAGCAGGGCTGTAGGTGGGCTATAGCTGTGGGCGGGGCCATGGGCGGGGCCGACTAAGCAGAGCAGGGCTGTAGGTGGACTATAGCTGTGGGCGGGGCCATGGGCGGGGCCGACTGTAGGCAGAGCAGGGCTATGGGCTGACTGTGGGCGTGGTGAGGGTGCCGTAGAGCATGCTAATGACCAGGGCGTGGTCATAGCAGGGTAGGGTCTTGGGTGCTCCTGGGGCTGGGGGGCTTCTCCACATGCTCCCCACACCTTCAGGAGTCGCCCTGCTGCGTCACGCACCACACGGCGCTTGTCCTCCAGCTTTGGCTCTGGCCGCTGCCTCCTTTGGTCACATGACCGTATAATCGGCCTCCCCTCTGAGACCCTGGGCTGGACCCCCGGCCTCCCTCTGCCTCCCCAGGCTCAGATATTCACCCGGAGGGAGAAAGGACATGTGTCCCCCATGCCCACACATCCCCAGCTACAGGCAGCTGGGGAGGACGGGTTCTAGGATGGCCATGTTACAGCTGAGGATGCAGAGGGGTTGGGTGATGGGTCTGCACAGCCACGGCGGGACAGGTGTCTCTGGACCCTCTCCCCAAGGTTGGCCCTGCCGGGGCCCTGGCTGGCTGGTGCTGGGTAATGTGCCCTGTCCCAGGAGCAGGGCCGGCCTCAGGGTCCTGAGCTCCAGGGCACTGGGGAAGTCCTGGCTCCATGAGGGCAGGACGGGCCCAGGACAGACCAGGGTGTTCTCCCCAG
Seq C2 exon
GTGGACCCCAAGCCCTTCTACGAGGCCTGTGTGCACGACTCGTGCTCCTGTGACACGGGTGGGGACTGTGAGTGCTTCTGCTCTGCCGTGGCCTCCTACGCCCAGGAGTGTACCAAAGAGGGGGCCTGCGTGTTCTGGAGGACGCCGGACCTGTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788-MUC2:NM_002457:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(15.3=28.8),PF087426=C8=PU(28.0=26.2)
A:
NA
C2:
PF087426=C8=FE(69.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGGGAACTTTGACCACC
R:
CCCCCTCTTTGGTACACTCCT
Band lengths:
348-1306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)