HsaINT0106849 @ hg19
Intron Retention
Gene
ENSG00000184956 | MUC6
Description
mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7517]
Coordinates
chr11:1033013-1036706:-
Coord C1 exon
chr11:1036604-1036706
Coord A exon
chr11:1033076-1036603
Coord C2 exon
chr11:1033013-1033075
Length
3528 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TGCGGGTCCCGTCCACACAGGTC
3' ss Score
9.03
Exon sequences
Seq C1 exon
GGCAGCAGCAGGCCTGCCGGGCCCAGCGCGAGCTCCTCTCCACTGTGCACCATGGTCCAGCGGTGGCTGCTGCTGTCCTGCTGCGGAGCCCTGCTCAGCGCTG
Seq A exon
GTGAGTGAGGTCGAGGGGCGCCAGACACTGCGGTGCCCTCAGAGGGGCCCTGTGTGCGGGGGTCTCTGGGCCTTCTCGCCTCGACAACTCGGCTGGCCCACATGGACGCTGATGGACGGGAGGCCCCAGCTCGGCTCCGTGACCAGCCCCCGCTGCCAGGCCCGGGTCCCCCCAGCAGCCGCGGTGCTGGGCTCTGCCAATTGGGGTCAGGGACCCCATGGGGCCTGGGCAGGGACGCCCTCCTGTGAGCTGGCACAGCAGCCAGCGGGGGAGGACGCTCAGCTGGAGTGGGGTCCGGCACTCCCGCGGGAACAGTGGGCAGGTGTGCTGGTGCCCAGCCCTGGCGCTCTCCCTCCCCGAGTGGGGTCCTGAGTCCTGAGAGGTCTCTGGAGTGTGGGGGACAGAGGCACAGTCTCTGCTGGGCCCTGGGCCTCGTTTCCTAGTCTACAGAAGTGGGGGACGCTGCCTCCCCTGGTGTGGCCGCCGTGGGGGGAAGAGGGGGGAAGGTGTACGGCCATCCTGGGCTCAGAACCGCCGCAGGCAGCCTGCCCTCTCCCCCGCGCTCCCCTACCCAGCTCGGGCAGGATCCAGGAGGGACTGACATCCTGGATCCTCTGCCAACCGCCTGCCCTGCGGCTGCTGCAGGTGACCATCAGTCCCTCCCCAGGCCCCCAGAAGGAGCCAGCCCCAAGGGGTCCCTCTGTGGCCGCAGCCTGAGACCTGGGGAGACCCCTCTTGCCGACCAAGGCACCAGCCCAAGGGCCTCTGTGTTCCGTGCTCCTCCTTCCTCTCCAAGCTGGCCCGACCCTCCTCCACAGCCGGGAGCCCCCTGGGGTGGACGCTGGCGTGACAGAGCTCGCCCTCGGAGCTGCTGCCAACCTGGGCGCCTCGGGCTCAGAGCACAGTGGGACCCCCCCAGGGGTGTCCCACTGTAGGGCGACCCAAGCCCACCCCACCCCTTCTCTCCTTTGAAGCCCCTTCCCCACCACGCCGGGCACCACCCTTCAACCGTGGGAGATGTGGGGGTCTCTGAGCTCGCTCCCCACCACGCCGGGCACCACCCTTCAACTGTAGGAGATATGGGGGTCTCTGAGCCCGCTCCCTACCACGCCGGGCACCACCCTTCAACCGTGGGAGATGTGGGGGTCTCTGAGCCCTCCCAGCGGTGCCCTCTGCTTGGGACCCCAGCCCCTACCTGCACACCTGGCACAGCTTGGGGACAAGTGCCAGGAAGTGGGGCTAAACTTGCAGCAGAGTGCGACCCCTAGTCCCTCGGGCCACCACCCTGGAGCCAGGGAGGGAGGTGTGGTGAGGCCCAGAGAGGCTGGAGGTCTGGGCTGTGGGCAGTGCAGAGGGTGGAGGGCCAAGTGGGGGTGTCCACCCGTCACCCCAGCAAATAATCTCTGAGCGCCATCTCTGCCAACATGGGAGGGGCCTCAGCCAGCAGAGTGTGGGGTCGGACAGACGGGCTGCAGGCCTGGGCCGCGGTGGGCCGGGAGGCAGGGGTGGGCGGCCGCCAAGCGTGCAGAAGGAACAGTGCGCACCTGCCGCCTCGTGCTCGTCCAGGGGCTGAGAGGCCGGGGGTGGCGGACCAACCCGCCCAGATGCCCATGCGCCTGGCCAAGGGATCAGCCGAGGGGAAGCACAGCCAGTCTGGGCAGGAACGCAGGAGTCTCCCGCTGGACTTCAGAGCTGGAGGCAGCCGACTTGGAGCCAGTGGACTCGGGGAACCTCCTGCGGGTGGGGCAGGGCGAGGGCGGCGGGGGGCGCAGGGGGTGCAGCAATGAGGCACCCACCCGGGGCAGTGAAGCCAGCCTGGCAGGGCTGAGGGCACCGAAACACAGGCCCGAGGTGTCTGTGCTACAGCGGGGACGGCCCCCAAGTGCCACCCCCCATCGGAAAGGTGGAGAAACTGAGTTGCAGGGGGCATTGCCCAGGGGAGACCGGTCACAGCTCTGCAGCCTCCAGAGGTGCTGGCCCAGGGGCAGGCAGCCAACTGCTCCTCCCGCTCAGAGCTCTCCCACCCCTCCCCCACCAGAGGCCAGCGAGGGCCCCATCCCAGGAACCACTGAGTTCCATGGCTGAGGGTTCGGTGTGCTGCGCACTCCTGCAGCAGGTGCTCTGAGCCCTGTGGATCATCCCTGGAAGGAATGGCGGGGGGCTGAGGACCATGACACCTACTGGGACCCCCAGGAGGGGGATGAGTGAGGGGGTAGGTGCTCGCCAGGCTCAGGGCCCAGCATGAGCCACCCCCACACCAGTCTGGAGTAAACTCAGCTTACACTGGGGATAAGCCAGGTGCAACCCATCAGAAAACGATCTCAAGGCCAAAGGGGACCACAGCCAAATATGTGTCCCACATAGCCAAGGTTGGCATTCTTCTTAAATCCAGTCACTCAAATACCCAACCTCCTGCCTGTGCCAGACAGGACTCACCCAGGCGGCCAAGGGGCAGGCAGCCTGGCTCCTCCCTGGACCGCGGTTAACACCATCTCCCAGCTGACAGGCCCCTGCCCCTGCGTCACCGGAGACACAGGTGTCCAGCGGTAATGGGGGCAGCATCAAGTAAGTCCCAGAAAGTGGGCAGAGCCTGGGGTGAGAGCACAGGTGAGGAGTGGCAGGAATGGGATCTCTGAGCTACATCTGGAAGGAGGTGCTGTGAGTGCCCTGCTAACCAATGGGCAGGGGCAAGGAGGGTCCCGGCCCCAAGAAGGGCCTGGAGAGGTCACGGGTCCTGCTCAGGTGCCGCACCACCACTCAGACATCGGGGGCTCGTGGGAGCCACAGGAAGGGTCATAGTCTCGGAGGCAGGGTCCGGGGAGTTACCCAGAGGTGGGAAAAGTCTCCCTCTGGGTACAGGGGGTGGGACGTGGGGGGTGTTGGCCCCACCCCAGCCTCTGGGAGTCAGGGTGGGACGTCCCCCGCTGCCCTGCCCTGGAGTCACCGTGACTGGGCTATCTGGATGTTTCTCTGACAACAGTGGCCTCAGTGCCAGGCCTGACATCAAGGCTGTCTCAAGGCTGACGTGCAGGAAAGCGGCCATGTTTAGAGCCCCGGAGCCACCGAGAGCAGGGAGAACCGGCTGTGGGGCCTTGGCGCAGACCCCTCAGGGAAACCAGGCGGCCAAGCTGGGGAGGCGGGCACAGCCCACTTTGTTGGCTCCGCCGCCAAGCCCCTGCCACCCGCACCAGCCCCTCCTAGCCCCACCCAGAAGCCCCAGGGATGAGTACCCTGCACACAGGGTGCCCGCCATCTGCCGAACCCCGAGGGGCTGACGGCTGAACTGGGACTGAGTGGACAAACGAGGGAGTGAACGAGAGCAGGGAAGGAAGCTGGGGCTCGTGAAGGACAGCATGGGAGGCCAAGCGCTTGGCTTGCTGTTGAGGCCTCGAGCCCCACGGGCCATGGACACTTCTCGCACGCCGAGTGTGTGCAGGGAAACGGGCGGAGCAGCCCTGAGCAGAGGTGAGCGGCGCCCTCAGGGACGACGGGGTAGCCCCACACCGACTGCGGGTCCCGTCCACACAG
Seq C2 exon
GTCTGGCTAACACCTCCTACACCAGCCCAGGCCTCCAGAGGCTGAAGGACTCTCCACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184956-MUC6:NM_005961:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.318
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)