HsaINT0106852 @ hg19
Intron Retention
Gene
ENSG00000184956 | MUC6
Description
mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7517]
Coordinates
chr11:1028646-1028961:-
Coord C1 exon
chr11:1028889-1028961
Coord A exon
chr11:1028784-1028888
Coord C2 exon
chr11:1028646-1028783
Length
105 bp
Sequences
Splice sites
5' ss Seq
CTCGTACGT
5' ss Score
7.59
3' ss Seq
CTGAGCACTGCGTCCTGCAGGCA
3' ss Score
5.38
Exon sequences
Seq C1 exon
GACAAAATTGTGATCTCTCAGGACGAGGTGGTCACCAACAACGGAGAAGCCAAGTGGCTGCCATACAAGACTC
Seq A exon
GTACGTCCTGGCCCAGTCTGTGGCCCCCCAGAGTTGTGCCTTCGGGGCGGGCTGCAGTGGGTGGGGAGGGAGCCCAGACGGCCCACTGAGCACTGCGTCCTGCAG
Seq C2 exon
GCAACATCACGGTCTTCAGGCAGACGTCCACCCACCTCCAGATGGCCACCAGCTTCGGGCTGGAGCTCGTGGTCCAGCTGCGCCCCATCTTCCAGGCCTATGTCACTGTTGGGCCCCAGTTCAGAGGTCAGACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184956-MUC6:NM_005961:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(15.6=100)
A:
NA
C2:
PF0009420=VWD=FE(29.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAAATTGTGATCTCTCAGGACG
R:
TCTGGTCTGACCTCTGAACTGG
Band lengths:
210-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)