HsaINT0106858 @ hg19
Intron Retention
Gene
ENSG00000184956 | MUC6
Description
mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7517]
Coordinates
chr11:1026941-1027193:-
Coord C1 exon
chr11:1027141-1027193
Coord A exon
chr11:1027051-1027140
Coord C2 exon
chr11:1026941-1027050
Length
90 bp
Sequences
Splice sites
5' ss Seq
TGGGTACGT
5' ss Score
7.7
3' ss Seq
CGCACCCCTCTTTCCTGCAGCCT
3' ss Score
9.57
Exon sequences
Seq C1 exon
CCACTGCATCAACGGGCGGCTGAGTTGCCCGCAGCGGCCACAGATGTTCCTGG
Seq A exon
GTACGTACAGCAGCGCTGGCCGCAGGCTGGGACTGTGAGGGGCCCCGGCTTCCTCTGAGTGTCCTGACCGCGCACCCCTCTTTCCTGCAG
Seq C2 exon
CCTCCTGCCAGGCCCCTAAGACCTTCAAGTCCTGCAGCCAGTCCTCCGAGAACAAGTTTGGGGCAGCCTGTGCCCCCACATGCCAGATGCTGGCCACCGGTGTTGCCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184956-MUC6:NM_005961:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0182612=TIL=PU(53.1=91.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAACGGGCGGCTGAG
R:
AACACCGGTGGCCAGCAT
Band lengths:
151-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)