HsaINT0106861 @ hg19
Intron Retention
Gene
ENSG00000184956 | MUC6
Description
mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7517]
Coordinates
chr11:1026000-1026478:-
Coord C1 exon
chr11:1026327-1026478
Coord A exon
chr11:1026142-1026326
Coord C2 exon
chr11:1026000-1026141
Length
185 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
CACACCTGCTGTCTCCACAGCTC
3' ss Score
10.13
Exon sequences
Seq C1 exon
GTGCCCACCAAGTGTGAGCCTGGCTGTGTCTGCGCCGAGGGCCTCTACGAGAATGCCGACGGGCAGTGTGTGCCCCCCGAGGAGTGCCCATGTGAGTTCTCGGGGGTCTCCTACCCTGGAGGAGCTGAGCTCCACACTGACTGCAGGACCTG
Seq A exon
GTGAGACAAAGCCTCGCTTCAGACGCCCTGGGCTCCTGGGGCCATCTGGGGCAGGCGGAGGCTGCCCGGGGTGGGGCTGTCCCAGAGGCGGGGGCGTCCAGAGGTGCAGTCTGGCCTCTCCAGGGACCACACCCAGTATGGCAGGAGGGCCGCAGGCCCACCACCCACACCTGCTGTCTCCACAG
Seq C2 exon
CTCCTGCTCAAGGGGGAGGTGGGCCTGTCAGCAGGGCACCCACTGCCCATCCACCTGCACCCTCTACGGGGAGGGCCACGTCATCACCTTCGACGGCCAGCGCTTCGTATTCGACGGCAACTGCGAGTACATCCTGGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184956-MUC6:NM_005961:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(43.8=54.9),PF0009313=VWC=PU(32.3=39.2)
A:
NA
C2:
PF0009313=VWC=PD(66.1=85.4),PF0009420=VWD=PU(18.4=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGGGCCTCTACGAGAATG
R:
CAGGATGTACTCGCAGTTGCC
Band lengths:
254-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)