HsaINT0107453 @ hg19
Intron Retention
Gene
ENSG00000109061 | MYH1
Description
myosin, heavy chain 1, skeletal muscle, adult [Source:HGNC Symbol;Acc:7567]
Coordinates
chr17:10418185-10419399:-
Coord C1 exon
chr17:10419243-10419399
Coord A exon
chr17:10418213-10419242
Coord C2 exon
chr17:10418185-10418212
Length
1030 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTCCACTGTTTTTCTTCTAGATC
3' ss Score
11.18
Exon sequences
Seq C1 exon
ACCTACTCAGGCTTGTTCTGTGTCACTGTCAACCCCTACAAGTGGTTGCCAGTGTATAATGCAGAGGTGGTGACAGCCTACCGAGGCAAAAAGCGCCAGGAGGCCCCACCCCACATCTTCTCCATCTCTGACAATGCCTATCAGTTCATGCTGACTG
Seq A exon
GTGAGTGGCTCAGCTGGTTTTCATATGAATTATTTTACCATCCATAATCACAAAATATTAGAACTAAAAAAAGACCTTTAGAAAAAAACCCAATTCACGCCCCTGGTTGTTCAGCAGAGGTGACTAAAGCACAGAGAAGTATATACTGTCAAAGCTCGTATTAAAACACAGCTCTCCTGATTACACCTCACTGACTTTACTAGGCCATGCTATTACTCCATCCCATTAAGTTTAATTTGTTTATGGTCTCCTTGCTTGGAAACACACAATTTATTTTATATATTTAAGTAATAAGAGCCAAGATTAAGTAACAACTGAATCATATAAATCATGTATTATCTGAATAGAAATGAAAAATAGGAGTTCAATCCTTTTGGTGCCTCAGTTTCTTGTTAATTATAAATTAGATTCTTTTACAAGTACTGTCATCTCTTTAAAGTTATCAGAGTACATCTCAGATATAATATCCTCTGTTTGAATGAAGATGATGTTTTGGGGCTACACACATATAAACAGAAATTGTTTTCCCCCCTTAGAAAGATTTTATTTTGATTGAGGCATCCTCTCTTACCTCATCTTTCTTTAACACAATGGTACACTTTGGGGAAGGCTGATCGAAGTTAGGGCTATATTGAAGTTAGTCTGTGGCCATAAGATAGTAAATTTTTTCTCTTTGTGAAGTCATCTGACACATTTAGAAACAAAATCTCAGTCATGGCTTGATTAACACTATTTCAATCTATTAAATAATAGTCCAAGCCTTTAGCATATTATGCATTTTTCAGCTATATGCATTAATTAGCAGATAGCATGCCATTGAAATCTACAGATGACAACTACGGAATGTATCTAGCTTTGGAGAATACTGCTCTTTATATTAAACCAGCAGGACACACCCATAACTTTACCATAATATATTGAAAAACCCCACTGAATACATGACACTTATACTCAAATGCCCTGTTTCACTATAGAAAGTTTTGTTTGTGTAACTGATACATATGCTGATTTTCCACTGTTTTTCTTCTAG
Seq C2 exon
ATCGGGAGAATCAGTCTATCTTGATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109061-MYH1:NM_005963:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(1.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACTCAGGCTTGTTCTGTGT
R:
TGATCAAGATAGACTGATTCTCCCGA
Band lengths:
183-1213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)