HsaINT0107836 @ hg38
Intron Retention
Gene
ENSG00000092054 | MYH7
Description
myosin heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:7577]
Coordinates
chr14:23434194-23435718:-
Coord C1 exon
chr14:23435620-23435718
Coord A exon
chr14:23434250-23435619
Coord C2 exon
chr14:23434194-23434249
Length
1370 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
AGCCTCTTCCCTCTCTCCAGGTC
3' ss Score
10.94
Exon sequences
Seq C1 exon
GGGGGTGGGGGTGCCCTGCTGCCCCATATATACAGCCCCTGAGACCAGGTCTGGCTCCACAGCTCTGTCCTGCTCTGTGTCTTTCCCTGCTGCTCTCAG
Seq A exon
GTAGGAGCGGGAGCTGGAGGCTTTACTCTGGGATAAGGGGGCTCCAGGCTTAGGAAGGGATTCCTCTTGGAATAGCAAGCTTCATGCAGGACTTCATGCAGAGTACCAGGTCCAGTCACTGGGCACACATGTGCAGGTCTAAACATGGGCGTATGTGCCACAGGAGTTCCTAGGGGAAGATATCTGCATCTGAGCATATGGGACCAATATGCATTACAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGACAAGCCTGCATAGTCTGAATGTGAGAAAGGGTATGTACCTCACTGACTGATACAGAAATATCAAGTGGGAGATGTGGGTGTATGATCACGTCTGTGAACGAGGAGGTTCCTTTGCAGGGAGGGAGAAAGAATGGTGGAGAAGGATTCTAGGAAGTGTGTATGCCTTCATGTGATTCTGTGAGGCCTGGAATGTGTAGCTACCCCTGTCCATGCATGCAGAGGTTCTTGTCTATGCCTCCACGAGTCATGACTGTTATAGTATCTGTACCCTCTGCAGAAGGAACTCACAGGCACGGGGGTGTAGGATGTTCCAGGTCTTTGTGTACTGAAGAACACGCAGTGATGTGATCTACTTACGTGGCACACATCCTGAAATGTGCACATTTGCTGTTGAGGCATATATGGCACCCTGGGGTTGGGGTGCGGATTGAGGTATGGGAAGGAAGCCTGTCTTCATGTGAGAGGCATGCCCAAGCAGCAGGCATGAGTGTTCATCAGAGGGCTTGTGGAGGGTGTTTGGCTATGTGATGGGTGTGTCTGTGAGAGGAAGCCCACAGTGTCTTCTCTCTGAGAATGTCCACAAAGTCTGACAACAAAATGGGGACAGGATGGAAAAGAAGTCTCTTTAGAGTCATCAGACTTGCATTCAAGTCTTGGCTCTCCCACTTGTTGTCATGGGCTCTTGGCCAAGCAAGCCATTTAACCTCGATTTCCTCATCTGTCAAATGGGGTGAAGACTGAGTAGGAGAAAGTGCATTGAAGTGCTTTTAGACTGGAAAGTGCCGAACAAATGTGACCATTAGTTGTCTCTCAGATGGCTCAAAGAAAGGTACCACTAGATGGGTACAGGCAGGGGTGGGACCATCTCGCAGGAGTGAAGAGGATTAGGGTTCAGGTTGAGTTGACACCAGGAAGCTGTTAGAACTAGTTCTTGAGGAAAAAGGGAATAGGGTTTGAAAAACAAGAAGGATGGGACCAGAGAAGCTGACCACCCTTTCCACCTTGTTTTGGAAGAGGGTGGATGCTGAAGAACAGAGCCAGGGAGAAGCAGGAAGGTGGGACTGGTCAGGTTGGGCACAGCCTGCCCTGACACAGCCTCTTCCCTCTCTCCAG
Seq C2 exon
GTCCCCTGCAGGCCTTGGCCCCTTTCCTCATCTGTAGACACACTTGAGTAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092054:ENST00000355349:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development