HsaINT0113494 @ hg19
Intron Retention
Gene
ENSG00000087303 | NID2
Description
nidogen 2 (osteonidogen) [Source:HGNC Symbol;Acc:13389]
Coordinates
chr14:52481772-52486012:-
Coord C1 exon
chr14:52485779-52486012
Coord A exon
chr14:52481994-52485778
Coord C2 exon
chr14:52481772-52481993
Length
3785 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCTCTTCCCCATCTGCTCAGAGC
3' ss Score
7.48
Exon sequences
Seq C1 exon
ACTCCACCTCAAGCCTGACACCCTGTGAACAACAGCAGCGCCATGCCCAGGCCCAGTATGCCTACCCTGGGGCCCGGTTCCACATCCCCCAATGCGACGAGCAGGGCAACTTCCTGCCCCTACAGTGTCATGGCAGCACTGGTTTCTGCTGGTGCGTGGACCCTGATGGTCATGAAGTTCCTGGTACCCAGACTCCACCTGGCTCCACCCCGCCTCACTGTGGACCATCACCAG
Seq A exon
GTGAGCTTAGGCCTGGGGCTCAAGAAGCAGAATGGCACTGGTGGTAGGTAGATCATAATTCCTGCCCAGACCACGCAGGCACGGGGCCAGTCACCATCCTTCATAGCCTCTTTCCTCCTGAGAAGACTTGAATAATAGTGCGTACAAATATGCATGTTTGTGTCATAAGGACATAGAGATATGCAATACATGACACATATGATCTGTTACACATTTGCCTCTTAGACCCTTGTCCAGTACAAACTGAAAGTTGAGATTGTGTATGTAGGTCAGACTGAGAACACTACCCTAGACCTGTTATAGAGCAGCTTAGGGAGATCTGACAGTTAGAAGATCTGGCCAGACTGGCGTTTTGACCAGAAGGAAAACTGCTTTCCTATGTAACTATCTCACTTACCTCTGCCTTCTGAATGGCAGGAAACAGTATGAACGCTCTGTTAGTATCAATAGGAAAAATTAGAAAAATAACACCTGCTAGTGGAGCCAGTTAGTTTTCTCTAAACTGACAATCCCAGCCCTCTGTAACCCAGCCCAACATCTCAGAGGAGGCACAGACATCTGGTTTCTGTTAGCCCATACAACCTGAGAACATGCCTGCTACCATCTAGAGCATTCCCCAGCTGGGTGGGGCATGGTGATCAAGTGCTCACAGTCGATTCCAACAGCAGGCAGATAAGGCAACTTTCTGTTCCTTGTTGAATTATTCAGGGATAGGTAAAACTTGTTTCTTTAATCATTACAGAAGAACTTTATTTAATGAAGAGCATAGGATTGGCTTGATACCGTTTTAGCCAAAATGATTCCGACACAGCTTGCTATCCAAAGATCCATTTTTACTATTGAGAAGGGTTCCATAAATACTAGTCTTGGCTTTTAATGTGTGAAAGTAAGAAGAACTGGAGAATTACCAATAGTTTTTTTCCCTTTTAATGGTGTTAACTGTTGCCCGGGTATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAAGAGATTGAGACCATCCTGGCCAACATAGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCACGCACCTGTAGTCCCAGCTCCTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCAGAGGTTGCAGTAGGCCAAGATCATGCCACTGCCCTCCAGCCTGGCAACAGAGTGAGACTCTGTTTTTTTTGTTTTTTTAAAAAAAGGTCAGGTCTTGGCGGTTCTCAGATAGGTAAAAATTGGTAATGGTTTGATCCATAGTCGCTCTTTGTTTCTATTTTTAGGAAAAGATTTTAAAGGTCCAAAAAAGGTACAGAGAAATTCTATTTCCCTCATGCCTTCTCTTTGAAAATGTCTTGGTTCTAACTCCATCTGGGATTTGAAGAAATCAAATGGTTGGGAGGTGCCTTTGGGGAATGGTTCAGAATTCGATTAAATTTATTAAGACAGGCATGTGTTAAGGACAATGATTTTAAAGGGGGAACCAAGATTTTAAAGGGGGGGGAACCAAGAGACTGAGAAGTGAATGACGAAAATAGGGTCGTGTTCTCTTGTGCGGACTTTTTCCTGCCCACACTCTCTCGGCGCTGGTTTGGCCCCAACTGCTATCTCTGACTGGTCTCATGTTTGATGGGGTCAGCTTGAGGGAGGGTAAGGACGCTCTGTGCCCACAATTTCAAAATACTTAAACCCTTGCCAACCAGAAGCACAAGAGAAAGAAATTCATGGTTGGGTTGAAAAGTAGCAAATAGTAACGAATGAAAGGGATGCCCATGTATGAGTGATTTGGGACACCCATTTCCCAGGAGTTAGGCATGTCTCTTTGTTTGGAATGCAGACACATAGCACAGGGTGGTCCCTTAAAGCAAAAATGGATCCTTGGAGTTCTGAATGTGGAGCAGGGGTGGAATTGGGAACTTCTCCAGGAAATCCTGCAGTGTTTGAGGAAGTAGCATTTCCCTCTCTGTGTTCCTTGAGACACATTTGGCTGAAGAAGTCAGAGTCTTACCTTCTCCACGGGGTCTTAAAAAGAGCTTTGTCTCCCATGGGTCATGAGCTACAGTGACAACTTAACGGCATTCGCTTCCCCCAATTCTGGTGAGTCGTGCAGTTGAGCTAGAGCTAGTTGGGTTTGAGCTCTGACAACTTCATTCGCAGTCTTTTGTGTTCCAAGAGGAATTGTAGGTGCTGGAACCTGATCATAATGCTCCCAGCTTTGTTCTTTAGAGTCACTGGAGGGTTTTGAACGGAGTGACATGAAATGCCTTTATGTTTAAAATGGGCCATTCTGGCTGCTGCTAATTGAATTTACACTGGTTTTGGAGAGAGTGAGGGCATAGAAGGGTGGAAGCAGGAAAACCAGTGGGAAGGCTGTTGCAGAAATTGCAGGGAGAGGATGAGGCTTTTTGACCAGGGTGAGGGGGTGCAGTAGTGAGAAGTAAAGATATTCTAAGTGGATTCTGAAGTTACCCCTAAAAAGAGTTTTTGACATATCAAATGTGGATGGTGAGAGAAAGGAGGGTCAAGGATAATTAGGTCTGAGCAGTGGAAAAATGGAGGTGCCATTTACTCATATGGGAAAGACCAGGGGAGCAGCTGGTTTGATGGTGAAGGCAGGGGCTCAGTTTCTATTAGTTTCTGATTTCTATTATACATCTAAATGGTGGTAGCAAGTAGGGTTATTGGCTATGTGATTCTGCAGACCATGTGCTTTAAGTTGCAGGAATTAAAAAGGAAGGAGAAGCACCTCCTCTTGTTTAAGTTCCTTTGGGTAGTCCTAACATAAATGAACAAGTTATCTCAATAACCTTCTGCAGCAGAGTCTTCTCAGAACAACCTGTATTTTGGACAAAGCCTCAATGGCACTGTGGAAGCAGCCTGGGAGGAAACTGCTTTGCAACCAAAGCCAGCAGGACTTCAACCATGGAGTGAGCTGTGAGGGAGGGGACAAGAGGAGAGGATGCTGGAGAAAGGGGGGGAAAGGGCAACACGGCAGGAAGCTAGAGCCTGCAGGAAAAGATTCAGCTTTGAGATAATCCCAGGCGCAGGGTGGCTAAAGCAATTCTGGAAACTGGGCTGTGGAAGAACCATTTTTAAGCTGTTTGCCACCACCTCTGCTATGCTTTACTACTAATTCCACTCAGTTTTACCTTTACTCCATGTAGTTTTCCAGTGGGTAGACAGAGGGCACCGTGGCGCTGGGCTTTCAGTAATACTTTCTAAGACACACACTGGCCAGTCGCAAGATGGCCCTCTCCTCAGCAGCTTCGAGCTTGAAGCTTGAAGCAAGTGGGGAATGAATACAAATTGGCTTTAAGCATCACCTCGGCTACTGAGTCCCCAAGGATCACCTGCACAAGTGCTCTGTCAGCAGAGGCGCCCGAGGTACAGGCAGGATGGGCCTTGTGGGCCTCTCCTGGCCAGAAGGAGATCATGCCCCTTCCCAGGCTGAGTGAGCTGCACTGCTGATCTTACCTCCTCTTGTTCTTTCTTGATGTGGCTGGGCCTTGATGACAGACCCTCCTGGCAAGAAAGAAGCATCACATGATCTATTTCTGATTCCCATGGTGGAGAAGTACTTAGAACACATTTGCTTCCCAAGTTTGGTGTCCACGGGCTTGGCTGAGACCTGGACAGTAGGAGAAGGAAGGCCAGGAGGCCAGGCATGGGGTCTTGAGCTACATTTTGCATTCTGTCCTTGACTCACAATCAAAGGTTTTTCTTCTTCCCTCTTCCCCATCTGCTCAG
Seq C2 exon
AGCCCACCCAGAGGCCCCCGACCATCTGTGAGCGCTGGAGGGAAAACCTGCTGGAGCACTACGGTGGCACCCCCCGGGATGACCAGTACGTGCCCCAGTGCGATGACCTGGGCCACTTCATCCCCCTGCAGTGCCACGGAAAGAGCGACTTCTGCTGGTGTGTGGACAAAGATGGCAGAGAGGTGCAGGGCACCCGCTCCCAGCCAGGCACCACCCCTGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000087303-NID2:NM_007361:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.291 A=NA C2=0.413
Domain overlap (PFAM):
C1:
PF0008613=Thyroglobulin_1=WD(100=83.5)
A:
NA
C2:
PF0008613=Thyroglobulin_1=PU(97.0=85.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)