HsaINT0113498 @ hg38
Intron Retention
Gene
ENSG00000087303 | NID2
Description
nidogen 2 [Source:HGNC Symbol;Acc:HGNC:13389]
Coordinates
chr14:52007810-52011047:-
Coord C1 exon
chr14:52010876-52011047
Coord A exon
chr14:52007968-52010875
Coord C2 exon
chr14:52007810-52007967
Length
2908 bp
Sequences
Splice sites
5' ss Seq
AGGGTCAGC
5' ss Score
3.64
3' ss Seq
TCTTGATTTTTAACTTACAGCAA
3' ss Score
8.03
Exon sequences
Seq C1 exon
GTCTGATAAGCCCTGAAGGACTTGCCATAGACCACATCCGCAGAACAATGTACTGGACGGACAGTGTCCTGGATAAGATAGAGAGCGCCCTGCTGGATGGCTCTGAGCGCAAGGTCCTCTTCTACACAGATCTGGTGAATCCCCGTGCCATCGCTGTGGATCCAATCCGAGG
Seq A exon
GTCAGCTGGGCTTCCCTAATTCTTCTCTTACCTGTAGATCCTGATGTGAAGCCCTTGGGTTTTAAATACAATGTGGGGAAGGTCAGAACAAGAGAGTGAAAGCTCAAATGCATTCATGTAACAAAGATTTACTGAGGATCTAAGAGGTGTCAGGACCTGTTCTAGGAAAAGACAAGGTCTGTTCTTTCATGGCACTTATATTTTATTAGGAGGAAACAAGACTGGTATAAACAATATTAGTCTGTGATGTGATATGTAGAAAATTCAGATAGTGTTGTGAGAACTAGGGCTACTCTGAATCAAATGATCAGGCGAGGCCTCAGCTGACACTTAAACTGGAAGTGAAGTGGGATTCCTCCAGCAGCACATTTAGAAACCAGGGTTGACGCTCACAGTAGGGCTGACCTACATCAAGTGACATTAGCCAAAGCTCAGACACCTCTGGCTTCAGTGTTGCTGTAGCAGAAATCAAGATAAACATTTTCCCTGTCTGTATAATTGCTAAGGTCATCAAATGTGACATACAGGATTTGTTCACTGTCTCAGTACTTGTTACAATCAGGGAGAATTTTTATATCTTGAGAAACTCTTGCCATGTTTAAGTGGAGTTTCTACGAAATGAAATTCCCAGATGCCCTTCAAATCAGTAAAGAAAACCTTCAGCTTTAATTTTCAGGTAAGTGCTTTTTGACTATGAAATACTTAGTGCAGTGCCTCAAAGGTGGTTTCAAACTTTGGGTTCTACACACAGGAAAAGTACCTGTATCCTTCTCTATTCCAGTTGACTTAACAGGAATTAATAGCCCTCTTAAAAACTCTTTGCATAGGCTTGCCTTTCTGACATTTGGACATTTGGAAGGTCCTTTTTTCTTTTTTTTTTCTTTTTTTTGAGACAAGGTCTTGCTTTGTTGCCGAGGCTGGGGTGCAGTGGCACAGTCTCGGCTGACTACAACCTCCATCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCATGTGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTCGAGACAGGGTTTCGCCATTTTGGTCTCCAACTCCTGACCCTGGGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGTATGAGCCACTGCGCCCGGCCCCTTATTCCTTCTTGGTGCTTGACCTGAAAACTGGGGAGAGCTGCCATCTTGTAGGCAATGAAACTTTGGCCATGTCTCTGGAGTCTGGGGAAAAAGCATACTTTTAAGCTGAAATCCACATCACAGCCATGAGTTTAAATATGAAAGTAGAACTTTCTTATCCAGACAGCAAATATAAATGCTAAAGGACTTGAATTTTTAATAAAAAGAAAACCCACCTTGAACCAGGTTGCAATATAACACATGTAATTACATCTCCTTCAACTGCGTAACAGAATGGTTGTCAAGCCTTCCTGCATATTTCTCATTTGCTTTCTATAGATTTCACCTTTACAACTTTCTTCCTCTGGCAATCCCCAAATAATTTACACCAAATATCTGTGTGAGCTTGTTTCAGACTTATTGTTGTTGATGATATTAAATCATTTTGGGGAGGAGACTGATCAGAAGCGATGAAGCAATGATATGCATGCTGTACCCTCTGGCCACCTCCACCTTAGCGCAAAGTGGAAACTGCTTTCTAGCTTTTGCTCTCAGCTTCTCTCTGCTTCATCTGTTGGGCATAAGGGATGAAATTCGCAACAGGGGAAACCTATGGTTTCTTCCTCTCCTCTCACTGAGGTTCTCTGTAGCCCAACTGATTTATTCAAAGCTTCTATAGCTTTTATAAAATAGTATTTTATAAAAAGTGCTTTCAACATTATTTCTGCTCTAACGATAAACCTGTTTGTTTCCTTATAACCTATTTCCACTTAATAGGACCATATTTCCTCGTTAGTATCTGTTATGAATATATTTCATTTTTAACGTGGCATTTAAAAGGTAAAGTGCTTAACTTAAAATGTTTCCATCCCTGGGTGCCAGGTACCCCTTCAAGTACCAAATTGTATTTTTGGCAGAAGAAAGAACAGTTTCCTTCTCAAATCCCTGGTCCACATCTCTTCAAGTTCCATAGTTTGTATCGAAGCCATTCCTAACAGCTGTATTTGTTTCTATTCTAAAACCCAAGATCCAATTCAAGACTTCAACAAACGGAGGGTTTTGGGGCAGTTGAGTCAAGGGGTATCTTGGAGGCAGGGATTCTGATAGTAACTTAGTAATGACTTCTCCCACATAGTGACAATAATCAGAAAACCTTGTGATACAGGTAAAAGTGGAATATGGCTGTGTATTAGTTACCTACTGCTGTGTAAGAAATTGCCCAAACCCTCAGCAGTGTAAGATAACATTTAGTCTCACAGTTTCTGTGAGTCAGGAATCCAAGTGTGTCTTCACCGAGCTCCCTCAGGCATGGAGTCTCTCACAAGGCTGCAATCAGGTAATGGCCAAACTGCAGTGATCACAAGGCTCAGCTCGGGGAAGACACAGCCCAAGCATGCTCACATGGGCTACAGGCAAGACTAATGTCTCTGGCCAACAGCCCTCAAGGACATCAGTTCCTTGGCACATGTTCCCCTTTACAGGGTAGCTTGCAACATGGCATCCAGCTTCCCTCAAAGGGAGCAAGAGAGAGCCCCTAAGGCAGAAACCAGTTTTTTGAGACCGAATATCGGCAGTGATAGCCTATCACTTCTGCTATACTCTATGCACTAGAAGAAGCAAGACACTACTAATGCAGCCCAAACTCAAGGGGATTGCTTAAGGCTATAATACATGAGGAGATGGAGATCACTGGGGGCTGCTTAGATGCTGCCTACCACAGGCTACATGGCTATTCTTTTACAATCTTGATTTTTAACTTACAG
Seq C2 exon
CAACTTGTACTGGACAGACTGGAATAGAGAAGCTCCTAAAATTGAAACGTCATCTTTAGATGGAGAAAACAGAAGAATTCTGATCAATACAGACATTGGATTGCCCAATGGCTTAACCTTTGACCCTTTCTCTAAACTGCTCTGCTGGGCAGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000087303:ENST00000216286:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(26.2=19.0),PF0005812=Ldl_recept_b=WD(100=70.7),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
NA
C2:
PF0005812=Ldl_recept_b=WD(100=79.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development