HsaINT0114796 @ hg19
Intron Retention
Gene
ENSG00000163072 | NOSTRIN
Description
nitric oxide synthase trafficker [Source:HGNC Symbol;Acc:20203]
Coordinates
chr2:169717305-169718559:+
Coord C1 exon
chr2:169717305-169717419
Coord A exon
chr2:169717420-169718469
Coord C2 exon
chr2:169718470-169718559
Length
1050 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
TACAGCTTTATCTATTTCAGCCC
3' ss Score
6.96
Exon sequences
Seq C1 exon
GAGCATACTCATAGCTATGTGAAAATATCTCGGCCTTTTTTAATGAAGAGATTAGAGAATATTGTGAGCAAGGCATCTTCTGGTGGGCAGAGCAATCCAGGTTCTTCAACTCCAG
Seq A exon
GTAATCCCATGCCCACAATCATTTTGGCCTGGGTCCTACTGGCAGGGCACATTGCTACATTTAAATTTTAGTTTCAGAGCCACTTTGACCTGTATCTGTTTAAGGAAATTTATATTTCCATTGGGACCGATTAATTTGTTAGACTCTGTAGCTTTATGTAAAAATGGGAAAAAGTTAAGAAGAGTAGAGGGTTGGGAAAGTATCCTATGAGAAGTTGCCTCAGATATCAGATGACTGGCATCCACCTTATTCAAATGGCCTGTTATTTGCCATAAACATAATCACACCTAAACCATCGTGAGGAGCTTTGTCGCTCTGTCTCCATAGCCTCCTCCAAACTCCCATAAGAAGCCTGTCCTCTCTGCGAGACACATGGTGATCCAGGTGGTTTGCCAGGGCTTGGACTCATGGCCTACAAACTCCTGTTAGCAGCCATCTGACTTCAGTCATTCATGCACCCACACACCACACTGCTCTTCATCTTTCAGCACACACACACGTGTCACTGTACCTGCATGTTCAAGTATAATTACCATAATCTTGACTATCTAGTTTTTTAAATTAGAAATTGGTTTAAAAAAAAAAAAAAGAACTTCAGTAAAACCAGGACATTATGGTTCACACAATATATTAAGGAGTCACTGTTGCATTGTTTGAGAAACAGTTCCATACACAGCTAGGGATGATGATAACATGCACATGCCCCAAATATCCCGTATTTATACCTGAATGGCAAAACTGGTGAATGTTTTCCAAAACATGCATGCAATTACTATTATTATACAATGATGTTTTTCTCTAGACTTGCTATTTCATGTATTATAATATAGTTTTTGGTTATATAACATATGCAGTCCATACATATAGAAAGTGCATCATAAGTGGTTATTGAATCAAGGAATGAACATTATATAAAATTACAAACTTTCCTTTTGAGAAAAATTTAATATATTGAAACTCTGCATCACACTGTTAAATAACCAAAGAGCTTCAGCTCATATTCATTTGCCTGCTAACACAGCATACTAATTACAGCTTTATCTATTTCAG
Seq C2 exon
CCCCTGGTGCAGCCCAGCTCAGCAGCAGACTTTGCAAGGCCTTGTATTCTTTTCAAGCCAGGCAAGATGATGAGTTGAATTTGGAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163072-NOSTRIN:NM_001171631:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.410 A=NA C2=0.129
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001823=SH3_1=PU(39.1=58.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCATACTCATAGCTATGTGAAAA
R:
TCCAAATTCAACTCATCATCTTGCC
Band lengths:
200-1250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)